current user: public

If you have questions about the server, please let us know.

Query: TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQLast
1 -4.930tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2  ali   12  13....................................................................................................................................LTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEE............................................................................................................................... 112
2 -4.890sp|Q659A1|NARG2_HUMAN NMDA receptor-regulated protein 2 OS=Homo sapiens GN=NARG2 PE=1 SV=2  ali   1....................................................................................................................................................................DISKDPNAEKLVSRYHPQIALTSQSKEQWEIPVCIQVIPVAGSKPVKVIYINSPLPQKKMTMRERNQIFHEVPL........................................................................................................... 86
3 -4.770tr|Q5JXB8|Q5JXB8_HUMAN Procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 (Fragment) OS=Homo sapiens GN=PLOD1 PE=2 SV=1  ali   12  7....................................................................................................................................LTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDRRLETKYPVVSDGKLGSGGFIGYAPNLSKLVAE......................................................................................... 146
4 -4.660sp|Q96F46|I17RA_HUMAN Interleukin-17 receptor A OS=Homo sapiens GN=IL17RA PE=1 SV=2  ali   10  4...................................................................................................................................................LEMFQPGRMHRVGELSGDNYLRSPGGRQLRAALDRFRDWQVRCPDWFECENLYSADDQDAPSLDEEVFEEPL------------------LPPGTGIVKRAPLVREPGSQACLAIDPLVGEEG........................................................................... 108
5 -4.480sp|Q8IWB6|TEX14_HUMAN Testis-expressed protein 14 OS=Homo sapiens GN=TEX14 PE=2 SV=2  ali   16  1.........................................................................................................................................................GFSY-KIDSPQRLVYSPSWCGGLVQGNPNGSPNRLLKAG------VISAQNIYSFGFGKAMPWFQF----LTGATQMAYLGSLPVIGEKEVIQADD................................................................................................ 90
6 -4.360sp|A4D126|ISPD_HUMAN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens GN=ISPD PE=3 SV=2  ali   10  10......................................................................................................................................................................................................................................SELNHVKVTSEALGHAGRHLQQIILDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCIL........................................................ 68
7 -4.340tr|C9JU11|C9JU11_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD3 PE=4 SV=1  ali   15  46....................................................................................................................................ITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGKKEMEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAES............................................................................................................................... 146
8 -4.280tr|Q5JXB7|Q5JXB7_HUMAN Procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 (Fragment) OS=Homo sapiens GN=PLOD1 PE=2 SV=1  ali   12  13....................................................................................................................................LTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDRRLETKYPVVSDGKLGSGGFIGYAPNLSKLVAE......................................................................................... 152
9 -4.030sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens GN=VPS13D PE=1 SV=1  ali   4........................................................................................................................................................................DIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSMELLGPVPPEQQFINQKMRPGSGMLSIRVIPDGPTRALQITDF................................................................. 115
10 -3.750sp|Q9UPU3|SORC3_HUMAN VPS10 domain-containing receptor SorCS3 OS=Homo sapiens GN=SORCS3 PE=2 SV=2  ali   12  11..................................................................................................RKDIGNVIKRALVKVTSVPEDQILIAVFPGLPTSAELFIGDLEQIVETLFNALNQNLVQFELKPGVQV--------IVYVTQLTLAPLVDSSAGHS....................................................................................................................................................... 112

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.