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Query: TM0008 TM0008 281889 Crystal|NMR-2001-04-01, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVLSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVELast
1 -5.770sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3  ali   11  2..................................GHSKQIRILLLNEMEKLEKTLFRLEQGYELQFRLGPTLQGKAVTVYTNYPFPGETFNREKFRSLDWEN-----------PTEREDDSDKYCKLNLQQSGSFQYYFLQGNEKSGGGYIVVDPILRVGADNHVLPLDCVTLQTFLAKCLGPFDEWESRLRVAKESGYNMIHFTPLQTLGLSRSCYSL..... 175
2 -4.610tr|B5MCL5|B5MCL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=SMARCB1 PE=4 SV=1  ali   14  21....................................................................................................DDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLAT--VEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKAS--------VEEILDGNDEKYKAVSISTEPPTYLSFDDHDP........ 127
3 -4.320sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens GN=DDR1 PE=1 SV=1  ali   21LPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVS-VPLGGRVARFLQCRFLFAGPWLLFSEISFIS......................................................................................................................................................... 90
4 -4.300sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3  ali   18  39...........................................................AGANYSQMPAGSFITAATVLVKKEKEMVGALVSDGLDRKEPRAGEVICI.................................................................................................................... 91
5 -4.130sp|O94880|PHF14_HUMAN PHD finger protein 14 OS=Homo sapiens GN=PHF14 PE=1 SV=2  ali   28..............................................................................................MRKAELMGISTDIFPVDNSDTSSSVDGRRKHKQPALTADFVNYYFERNMRMIQI............................................................................ 81
6 -4.100sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3  ali   16................................................................SGWPTMVLVLPGNEALFSLETASDYVKDDKASFYGFK---CFAIGYEFSPGPDEGVIQLEKELANLGGVCAAALMKKDLALPIGNELEEDLEILEEAALQVCKTHSGILGKGLALSHSPTILEALEGNLPLQIQSNEQSFLDDFIACVPGSSGGRLA... 169
7 -4.060sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2  ali   18  4..LDLIYISGEKSQPDPGETDLTAQHFIRFEPENLRSTARKQLIIRNATHVELAFYW....................................................................................................................................................................... 59
8 -3.950sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2  ali   13  21....................................................................................................DDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLAT--VEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKAS................................................ 94
9 -3.870sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2  ali   11  1...DLGITVED----LPKSDLIKTTLQCALERELKGHV--------ISESRSIDGLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLLHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCP-LAYLGCTF-VQNHFRPPGQKAKVIYSQELKT................................................. 161
10 -3.830sp|A6NE02|BTBDH_HUMAN BTB/POZ domain-containing protein 17 OS=Homo sapiens GN=BTBD17 PE=2 SV=1  ali   1.............................................................................VTPASSGGDAAGVSFQKTVLVGARQQGRLLVRHAYSFHQSSEEAGDFLAHADLQRRNSEYLVENALHLHLI............................................................................ 71

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.