current user: public

If you have questions about the server, please let us know.

Query: TM0013 TM0013 281894 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -4.420tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1  ali   28................................FHVMRLTDSLFLWVGATPHLRNLAVAMCSRYDSIPVSTSLLGDTSDTTSTGLAQRLGLGGKTGLACE.......................................................................................................................................................... 94
2 -4.280sp|Q8WYQ4|CV015_HUMAN Uncharacterized protein C22orf15 OS=Homo sapiens GN=C22orf15 PE=2 SV=1  ali   4................................KVMFGAGCSVLVNTS---RLVNLTAHLRQKAGLPPDATIALL----AEDGNLVSLEEDLKEGASRAQTMGNSLLKE................................................................................................................................................. 73
3 -4.150sp|Q96QF0|RAB3I_HUMAN Rab-3A-interacting protein OS=Homo sapiens GN=RAB3IP PE=1 SV=1  ali   3...........................................ADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFC----RYRITSVCNFFT--------------------YIRYIQQGLV-KQQDVDQMFWEVMQLRKEMSLAKLG............................... 160
4 -4.010sp|Q14679|TTLL4_HUMAN Tubulin polyglutamylase TTLL4 OS=Homo sapiens GN=TTLL4 PE=1 SV=2  ali   7...............................PEHVTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIF..................................................................................................................................................................... 63
5 -4.010tr|E7EX20|E7EX20_HUMAN Uncharacterized protein OS=Homo sapiens GN=TTLL4 PE=4 SV=1  ali   7...............................PEHVTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIF..................................................................................................................................................................... 63
6 -3.830sp|Q6ZSC3|RBM43_HUMAN RNA-binding protein 43 OS=Homo sapiens GN=RBM43 PE=2 SV=1  ali   2.....................................SGEMLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTI----CLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEGKENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGS.......................................................................................... 123
7 -3.800sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1  ali   24  40..............................NHMLLLYPREILILDTVGVIAIERTGVPFLQVIPCFQRDGLFCLH.................................................................................................................................................................................. 89
8 -3.790sp|Q99932|SPAG8_HUMAN Sperm-associated antigen 8 OS=Homo sapiens GN=SPAG8 PE=1 SV=2  ali   1............................................DTGPDSELPPGFRNLVADRVPNYTSWSQHCPWEPQKQPPWEFLQVLEPGARGLWKPPDIKGKLMVCYETLPRGQCLLYNWEE----ERATNHLDQVPSMQDGSESFFFRHGHRGLLTMQL......................................................................................... 120
9 -3.770sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2 SV=1  ali   12  28..................................................................................................................KDLRLVSISNEPMDVPAGFLLVGVKSPSL--PDHLLVCAVDKRFLFSGNCVGC-----------------KKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGTLTKGPLI....................... 136
10 -3.730sp|Q5T1B0|AXDN1_HUMAN Axonemal dynein light chain domain-containing protein 1 OS=Homo sapiens GN=AXDND1 PE=1 SV=1  ali   10  10...........................................................................................................................................................SKPLFETDVLSSWRESAKQGTLAQKYLEAMAVIEHMQEKLLEVENRARQAEEKFEDAYEKL----HHTLIKNKDLEELV................... 84

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.