current user: public

If you have questions about the server, please let us know.

Query: TM0017 TM0017 281898 Purified-2003-03-05, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390
# Score Template Links and tools%idFirst MRMERVVERVAVTGAEAVANAMRQIEPDVVAAYPITPQTPIVEYFARFVADGVVRTEMIPVESEHSAMSAVVGAAAAGARAMTATSANGLALMHEIVYIAASYRLPIVMPVVNRALSGPINIHCDHSDAMAERDSGWIQLFAETNQEAYDFTILAVRLAEHEDVRLPVMVNLDGFILSHGVEPVEFYPDELVKKFVGELKPMYPLLDTEHPVTWGPLDLYDYYFEHKRQQIEAMENVKKVFPEIAKEFEETFGRKYWFVEPYRMEDAEHVMVALGSTNSTIKYVVDELREEGYKVGSLKIWMFRPFPKEQLQELLNGRKSVVVLDRAVSFGAEAPLYEAVKSALYEVAARPMLGSYVYGLGGRDIKPEHIRKAFEDAINGNLIADEQRYLGLRELast
1 -6.480sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2  ali   27  61..........ILSSKESMC----------TPAFPVSPETPYVKTALRH.......................................................................................................................................................................................................................................................................................................................................................... 89
2 -5.790sp|Q9P2N6|K1310_HUMAN Uncharacterized protein KIAA1310 OS=Homo sapiens GN=KIAA1310 PE=1 SV=2  ali   20  7.........................................MQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTGGLAKLASSLPGLAQISNQ---ASGLKVPTTITLTLRGQPS.................................................................................................................................................................................................................................................................................... 88
3 -5.580sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4  ali   13  1...........................KIRQIYQASPQTTTEQAILEGQYAALEGSQFWATEDATTTASAVVAIEIPQSQGWYTVQSDGVTYIAPPGILSTVSEIPLT.............................................................................................................................................................................................................................................................................................. 90
4 -4.980sp|Q96QZ0|PANX3_HUMAN Pannexin-3 OS=Homo sapiens GN=PANX3 PE=2 SV=1  ali   8.........................DKRLLSVYEMLPAFDLLSRKMLGCPINDLNVILLFLRANISELISFSWLSVLCVLKDTTTQKHNIDTVVDFMTLLAGLEP................................................................................................................................................................................................................................................................................................. 87
5 -4.880tr|F5H1Y7|F5H1Y7_HUMAN Uncharacterized protein OS=Homo sapiens GN=TBR1 PE=4 SV=1  ali   19  2..................................VTPANNRLDFAAS---------AYDTATDFAGNAATLLSYAAAGVKALPLQAAGC................................................................................................................................................................................................................................................................................................................. 47
6 -4.880sp|Q16650|TBR1_HUMAN T-box brain protein 1 OS=Homo sapiens GN=TBR1 PE=1 SV=1  ali   19  2..................................VTPANNRLDFAAS---------AYDTATDFAGNAATLLSYAAAGVKALPLQAAGC................................................................................................................................................................................................................................................................................................................. 47
7 -4.710sp|Q8NG48|LINES_HUMAN Protein Lines homolog OS=Homo sapiens GN=LINS PE=2 SV=2  ali   17  10...................................................................................................................................................................................................................................................................................SEVGIFYRIVKCFQELQDAICRLQKKNLFPYNPTALLKLLKYIEVI......................................................................... 55
8 -4.450sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN=FOXB2 PE=2 SV=1  ali   17  1....................................PLASVMHHLGYPVPG-QLGNVVSSVWPHVGVMDSVAAAAAAAAAAGVPVGPEAFGVPVKSLCHSASQSLPAMPVPI-KPTPALPPV................................................................................................................................................................................................................................................................................ 86
9 -4.230sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2  ali   15................................YCISPKQVVVPAGGSSTIYISFTVLSPEILHKVECTGYALGFMSLDSKVEREIPGQDFAVGPLKLDLHSYVRPAQLSVELD-----------YGGSMEFQCQASDLIPEQPCSGVLSELTTHHLKLTNTTEIPHYF.................................................................................................................................................................................................................................. 147
10 -4.210sp|Q68DV7|RNF43_HUMAN RING finger protein 43 OS=Homo sapiens GN=RNF43 PE=1 SV=1  ali   15  28...........LEGVFAGVAEITPAEGKLMQSHPLYLCNA-----DDNLEPGFISIVKLESPRRLSLASKARMAGERGASAVLFDITEDRAAAEQ-LQQPLGLTWPVVLIWGNDA....................................................................................................................................................................................................................................................................................... 132

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.