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Query: TM0002 TM0002 281883 Purified-2001-08-29, from T.maritima

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
# Score Template Links and tools%idFirst MSPEDWKRLICFHTSKEVLKQTLDDAQQNISDSVSIPLRKYLast
1 -5.2705v7q_O mol:protein length:122 50S ribosomal protein L18  ali model follow..  17  32.......RLVVHRSARHIHVQLVNDLNGTTVAAAS...... 59
2 -5.1406au8_C mol:protein length:43 Large proline-rich protein BAG6  ali model follow..  25  8..PPEWVPII----QQDIQSQRKVKPQPPLSDA........ 34
3 -4.8805o60_P mol:protein length:127 50S ribosomal protein L18  ali model follow..  17  37.......RLVVNRSARHIHVQLVNDLNGTTLAAAS...... 64
4 -4.7904v4i_M mol:protein length:112 50S ribosomal protein L18  ali model follow..  32  25.......RLSVFRSLKHIYAQIIDDEKGVTLVSAS...... 52
5 -4.7301nkw_M mol:protein length:114 50S ribosomal protein L18  ali model follow..  28  28.......RLSVYRSSKHIYAQIIDDSRGQTLAAAS...... 55
6 -4.7004wce_L mol:protein length:119 50S ribosomal protein L18  ali model follow..  24  30.......RLNVYRSNKHIYAQIIDDNKGVTLAQASS..... 58
7 -4.6602g9l_A mol:protein length:37 Gaegurin-4  ali model follow..  34  10..............AKGVGKDLVKGAAQGVLSTVSCKLAK. 35
8 -4.5604hb1_A mol:protein length:108 DHP1  ali model follow..  52  1.............SSEELLKQALQQAQQLL........... 17
9 -4.5301ovy_A mol:protein length:120 50S Ribosomal Protein L18  ali model follow..  32  30.......RLSVFRSNKHIYAQIIDDTKSATIVSAS...... 57
10 -4.4902cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR  ali model follow..  31  8.......KVMCYHSSPELLRRCLDNCEKE............ 32

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.