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Query: TM0004 TM0004 281885 Purified-2004-07-19, from T.maritima

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30
# Score Template Links and tools%idFirst MKDLYERFNNSLEVWKLVELFGTSIRIHLFQLast
1 -4.6102yue_A mol:protein length:168 Protein neuralized  ali model follow..  10  134...ILTGIDTRSLLWTVIDIYGNCTGIEFLD 161
2 -4.5504kg0_A mol:protein length:169 Protein neuralized  ali model follow..  11  135...ILTGIDTRSLLWTVIDIYGNCTGIEFL. 161
3 -4.3205g1x_B mol:protein length:63 N-MYC PROTO-ONCOGENE PROTEIN  ali model follow..  34  7.DDFYFGGPDSTDIWKKFELLPTP....... 33
4 -3.9605ig0_A mol:protein length:148 CAMK/CAMK2 protein kinase  ali model follow..  17  121..RVWVKDAAFKFGWKLVHFHRSGA...... 143
5 -3.7901s69_A mol:protein length:124 Cyanoglobin  ali model follow..  28  1MSTLYEKLGGTTAVDLAVDKFYERV...... 25
6 -3.6802gjf_A mol:protein length:78 DESIGNED PROTEIN  ali model follow..  10  19LEALAKQDELNFDWQNPPTEPGQPVVILI.. 47
7 -3.6402e63_A mol:protein length:170 KIAA1787 protein  ali model follow..  27  149........GLPPRVWAVVDLYGKCTQITVL. 170
8 -3.5902yj0_A mol:protein length:69 DODECIN  ali model follow..  35  1..........SNHTYRVIEIVGTS....... 14
9 -3.5902lcl_A mol:protein length:66 Transcriptional activator rfaH  ali model follow..  10  30FQAIFTEPDGEARSMLLLNLINKEIKHSV.. 58
10 -3.4001vjq_A mol:protein length:79 designed protein  ali model follow..  10  17LEALAKQDELNFDWQNPPTEPGQPVVILI.. 45

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.