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Query: TM0014 TM0014 281895 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKILast
1 -69.2003g67_A mol:protein length:213 Methyl-accepting chemotaxis protein  ali model follow..  100  1........................................RIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETA......................... 213
2 -51.8002ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN  ali model follow..  19  12.......FSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIV. 305
3 -45.6004jpb_B mol:protein length:90 Methyl-accepting chemotaxis protein  ali model follow..  96  2.......................................................................................................SHMSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLEN...................................................................................... 90
4 -39.7003zx6_A mol:protein length:341 HAMP, METHYL-ACCEPTING CHEMOTAXIS PROTEIN I  ali model follow..  21  36....................IGILAKSIERLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIED-------SVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAV. 299
5 -20.6004tql_A mol:protein length:247 Three helix bundle  ali model follow..  14  28...KEMVELIQKAIELMRKIFQEVKQEVEKAIEEMKKLYDEAKKKIEQMIQQIKQGGDKQELLKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEMEEVKKKMDGDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELI-------------KKILQLIEKAKEIAEKVLKGLE............................................................... 241
6 -18.1005cwg_A mol:protein length:210 Designed helical repeat protein  ali model follow..  12  2.......................................................SSEKEELRERLVKIVVENAKRKGDDTEEAREAAREAFELVREAAERAGILELAIRLIKEVVENAQREGYDISEAARAAAEAFKRVAEAAKRAGITSS--EVLELAIRLIKEVVENAQREGYDISEAARAAAEAFKRVAEAAKRAGITSSETLKRAIEEIRKRVEEAQREGNDISEAARQAAEEFRKKAEELKRRGDG.......................... 201
7 -16.4005cwc_A mol:protein length:210 Designed helical repeat protein  ali model follow..  12  3...............................SEKEELRERLVKICVENAKRKGDDTEEAREAAREAFELVREAAERAGIDSSE------VLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITSSEVLELAIRLIKE------CVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITSSETLK------RAIEEIRKRVEEAQREGNDISEACRQAAEEFRKKAEELKRRGDGWLE........................... 204
8 -12.9003dyj_A mol:protein length:332 TALIN-1  ali model follow..  9  56...EGILKTAKVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGNAVKDVAKALGDLISATKQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFCSPEPTSTPEDFIRMTKGITMATAKAVAAGNSCRQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLL--TLQKPNPDLKQQLTGHSKRVAGSVTELIQAAEAMKGT....................... 332
9 -12.8004f7g_B mol:protein length:216 Talin-1  ali model follow..  9  23......................ECETAIAALNSCLRDLDQASLAAVSQQLA-GISQEALHTQMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAE-----SALQLLYTAKAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQAINQLDE......................................................................... 203
10 -12.6001sj8_A mol:protein length:308 Talin 1  ali model follow..  12  1...RGHMPPLTSAQQALTGTINSSMQAVQAAQATLDKMDESKHEIHSQVDAITAGTASVVNPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGE---------FQDVLMQLANAVASAAAALVLKAKSVAQRTEDSIAAATQCALSTSQLVACTKVVAPTISSPVC-----QEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNEL..... 300
11 -11.8006gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  8  2..................GSSSSGLVPRGSHMASSKGLESRVSALEKTSQIHSDTILRITQGLD----DANKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNGLDSSVTQLGARVGQL-----ETGLAELRVDHDNARVDTAERNIGSLTTELSTLTLRVTSIQADFESRISTLERTAVTSAGAPLSIRNNRMTMGLNDGLTLSGNNLAIRLPGNTGLNIQNGGLQFRFNTDQFQIVNNNLTLKTTVFDSINSRIGATEQSYVAS..... 249
12 -11.5001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  10  5...KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIES-KDEEKMEIQEIQLKEAKH----------AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE... 272
13 -10.6002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  11  5...KKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI-----ESRAQKDEEKMEIQEI----------LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL... 265
14 -9.7306gao_A mol:protein length:240 Outer capsid protein sigma-1  ali model follow..  11  1...............................GSHMEEIKKQVQVNVDDIRAANIKLDGLGRQIADSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNL-----TGRTSTLEADVGS------------LRTELAALTTRVTTEVTRLDGLINSGQNSIGELSTRLSNVETSMVTTAGRGLQKNGNTLNVIVGNGMWFNSSNQLQLDLSGQSKGVGFVGTGMVVNSNGEITLVSQINELPSRVSTLES... 239
15 -9.6702efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin 1 alpha chain  ali model follow..  11  1....................................................................................................RMKQLEDKVEELLSKNYHLENEVARLKKLLERAE-----------------------AELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL.. 155
16 -9.4305l0f_A mol:protein length:176 Vinculin  ali model follow..  11  2..........................................QPVNQPILAAAQSLHQEATQWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVANLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVQEAEAAS............................................................................................ 155
17 -9.0405kuc_A mol:protein length:475 Pesticidal crystal protein Cry6Aa  ali model follow..  8  124.................SIKKDGYFKKLQDELDNIVDNNSDDDAIAKAIKDFKARCGILIKEAKQYEEAAKNIVTSLDQFLHGDQKKLEGVINIQKRLKEVQTALNQAHGESSPAHKELLEKVKNLKTTLERTIKAEQDLEKKVEYSFLLGPLLGFVNTAVQHIKNQIDEIKKQLDSAQHDL-DRDVKIIGMLNSINTDIDNLYSQGQEAIKVFQKLQGIWATIGAQIENLRTTSLQEVQDSDDADEIQIELEDASDA-----LVVAQEARDFTLNAY 385
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.