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Query: TM0014 TM0014 281895 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKILast
1 -47.700PF03532.13; O50963_BORBU/3-255; OMS28 porin  ali follow..  11  8...................................................INGLLFGFVSLNVFADSNNANILKPQSNVLEHSDQKDNKKLDQKDQVNQALDTINKVTEDDAGVVKKFVGSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGARDLTKVMAI... 250
2 -37.000PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain  ali follow..  25  4.......................................................................................AKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIEN-------SVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVT............................. 158
3 -11.200PF03207.13; H7C7Q2_BORBU/1-254; Borrelia outer surface protein D (OspD)  ali follow..  16.......................................LSISCVHDKQELSSKSNLNNQKGYLDNEGANSNYESKKQSILSELNQLLKQTTNSLKEAKNTTDNL-NASNEANKVVEAVINAVNLISSAADQVK----SATKNMHDLAQMAEIDLEKIKNSSDKAIFASNLAKEAYSLTKAAEQNMQKLYKEQQKISESESESYSDSAEIKQAKEAVEIAWKATVEAKDKLIDVENTVKETLDKIKTKLADIKEAAELVLQIAKNAKEIVQEVVAL.. 254
4 -10.900PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  65.....................TRMAALLSQAIVLMSALRTADNALSTKLSLVSFDATKATAASREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKLGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAARPEVAELSAQPNSLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSASEETRESSRKADSIIQELLRTLEGISQ... 339
5 -10.700PF06008.14; LAMA1_HUMAN/1575-1831; Laminin Domain I  ali follow..  15....GILSNLENTTKYLQESLLKENMQKDLGKIKLEGVAEETDNLQKKLTRMLAS----TQKVNRATERIFKESQDLAIAIERLQMSITEIMEKTTLNQTLDEDFLLPNSTLQNMQQNGTSLLEIMQDFTQLHQ----NATLELKAAEDL---LSQIQENYQKPLEELEVLKEAASHVLSKHNNELKAAEALVREAEAKMQESNHLLLMVNANLREFSDKKLHVQEEQNLTSELIVQGRGLIDAAAAQTDAVQDAL...................... 257
6 -9.150PF05667.11; CCD22_AEDAE/1-553; Protein of unknown function (DUF812 topsan)  ali follow..  11  337.EEKKIKERTHILLEDPEVNVKKLEAIIAAGGERMKKLQDQWDAHRIPLVDTLEAYRLKNSDKLSKSQQVLDQIESTRQKCEEVVIDLQTKGAMYARLQKEFEKLNKTIGNIRKQKNGIDQILQDTRSLQKEINNIT----------GQLDRQFTVTDDLIFRNAKK-DEHSKRAYKLLVTLHSDCEELIKLVQETGAIKREVRDLEDQIENEKGR.............................................................. 553
7 -8.880PF06160.12; R7G8R1_9FIRM/22-573; Septation ring formation regulator, EzrA  ali follow..  96.AARRRLNELSDDLALCETDVNKIHTVLDDILEQENEQRVHINALKETFRKVKKTIHENRTAYSQSYEYLETEIIAIEKMFSKFEEWMFKAADQQKEIKESITRLNEIVEALPSLYERAKGILRAIDEVGYSDMLKNDLNRLHSGTPENVKEDLDDLEVRIAQLIRLEEEAFDEVNDGLTALFDSIREVNCEFDDIKSLYARVYQRLQDTQTRLDVLNDMQRRLDKIVLDKQVPYTTILIAYKELAQSNAGFSKEVELMKEKLNNACSDEERAKK... 411
8 -8.860PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  16  1................................................SNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQLDDVEGSVSKLNELAEDIEEQQHRVGSQSRGQEIENLKAQVEAAR----------LANSIK.................................................................................................................... 107
9 -8.550PF00261.20; I3J233_ORENI/12-247; Tropomyosin  ali follow..  12  5.................................CLQQQADDAEDRAQVLQRELDSERELREKAEGEVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEAD---RKYEEVARKLVILEGELERAEERAELSECKASDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKVLTDK----LKEAETRAEFAERTVAKLEKSIDDLEEKLSHAKEENLGMHQVLDQ............. 229
10 -8.510PF10174.9; H2T771_TAKRU/113-856; RIM-binding protein of the cytomatrix active zone  ali follow..  12  268...KMKIEQLKQELNKKESEMQALQTKLETLTNQNSDCKQHIDVLKESFSAKEQRANTLQTEVDALRVRLEEKEQFLTKKTKQLQDLTDEKSTLTGEIRDLKDMLDVKERKVNVLQKKIENLLEQLKDK--DKQLAGLRERVQGFQTDSSN-----TDTALATLEEALSEKERVIENLREQKEREDRTRLEELDQMRKENQELKDKLTALQPPKELKEFSLVDLMCSSQAVFTLLTSTPIKDLDVWSHHKSAAMKNSGLIGILSRTQNTEEATRK... 532

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.