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Query: TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQLast
1 -75.800d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  100  1............................................................................................................................KRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 221
2 -71.400d3r1za2 c.1.11.0 (A:128-357) automated matches {Francisella philomiragia [TaxId: 484022]}  ali model 3D-neighbors follow..  29  1............................................................................................................................KANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFALA-EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDN 222
3 -69.900d3ik4a2 c.1.11.0 (A:127-355) automated matches {Herpetosiphon aurantiacus [TaxId: 316274]}  ali model 3D-neighbors follow..  37  2.............................................................................................................................SKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADV 222
4 -68.500d3rita2 c.1.11.0 (A:126-354) automated matches {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  33  1............................................................................................................................AHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLHETLGRAVVRVDPNQSYDRDGLLRLDRLVQE--LGIEFIEQPFPAGRTDWLRALPKAIRRRIAADESLLGPADAFALAPPAACGIFNIKLMKGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTER 222
5 -67.900d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  37  2.............................................................................................................................RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGDDIATDIARIQEIRKRVSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGK 224
6 -64.800d2pgwa2 c.1.11.0 (A:132-374) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  22  1...........................................................................................................................AHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEK--YDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIWQLVQEDIVSSPDLTPKNGWLDAFRK 222
7 -64.400d3q4da2 c.1.11.0 (A:125-368) automated matches {Cytophaga hutchinsonii [TaxId: 269798]}  ali model 3D-neighbors follow..  32  2............................................................................................................................KDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREAADSITLRIDANQGWSVETAIETLTLLEP--YNIQHCEEPVSRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGVYQQRGIIEVPET 223
8 -63.900d3i6ea2 c.1.11.0 (A:133-375) automated matches {Ruegeria pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  27  3.............................................................................................................................RDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQ--FQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCYQASYFLNEDILETPFRVEAGQVIVPDG 224
9 -62.000d2ps2a2 c.1.11.0 (A:131-370) automated matches {Aspergillus oryzae [TaxId: 510516]}  ali model 3D-neighbors follow..  15  3.............................................................................................................................NTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQPDEFFIVDANGKLSVETALRLLRLLPH--GLDFALEAPCA--TWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIVHLAQTIPERSLRCLECRDMVTVKTADGAFDIQDGFATAPTT 221
10 -61.600d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  27  3.............................................................................................................................PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLG--VAMLEQPLPAQDDAALENFIH--PLPICADESCHTRSNLKALK--GRYEMVNIKLDKGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVS---FADLDGPTWLAVDVEPA-LQFTTGELHL... 208
11 -61.400d4m0xa2 c.1.11.0 (A:130-371) automated matches {Rhodococcus opacus [TaxId: 37919]}  ali model 3D-neighbors follow..  25  3.............................................................................................................................RKRIPITWAFSAGSASDLIDEAAQKLDVGHRSFKFKMGEPADTDSRRVLDVLECIPECAVIVDPNGRWSELEAHRWLPILAD--AGVTVAEQPIARWNTDGLARLRDKLSIPIMADESVTTVQQAIALADAGAVSAFAIKIPKGGLSRAREIAAIAEASGLACFGAATPESSVMGAISAQLYGTMPDLSVGELFGPGLLIDEVVTEPLKYDRGELLIPTG 224
12 -60.500d4mgga2 c.1.11.0 (A:128-367) automated matches {Labrenzia aggregata [TaxId: 384765]}  ali model 3D-neighbors follow..  20  1...........................................................................................................................AAQDDVALYRAISQEAPEIMAKKIEGYAAEGYTKFQLKVGGDANDDINRIHATRSVLKSDLLVADANTGWTRHEAARVVGAVSS--LDVYIEQPCLT---YEESVSIRRRTALPFVLDEVIDGPNTLVRGIAEDAMDCINLKISKGGLTKAKLMRDLCIAHGIPMTIEDTWGGDIVTAAIAHLARSTPSEFTFSTDFNSYGTVDIAEGAPKRVNGRMTTSDL 220
13 -59.300d3fvda2 c.1.11.0 (A:128-368) automated matches {Roseovarius nubinhibens [TaxId: 89187]}  ali model 3D-neighbors follow..  19  3.............................................................................................................................ATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGDPAQDIARIEAISAGLPGHRVTFDVNRAWTPAIAVEVLNSVR----ARDWIEQPCQTLD--QCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTAALHLAASTPEANRLALGHAHLADDPIPGQGARNRDGLATPPSA 221
14 -59.300d4j1oa2 c.1.11.0 (A:127-369) automated matches {Paracoccus denitrificans [TaxId: 318586]}  ali model 3D-neighbors follow..  18  2............................................................................................................................AAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGRPVEIDIETVRKVWERITGTRLAVDGNRSLPSRDALRLSRECPEIPF---VLEQPCN--TLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAACTHIGATVQPRLNEGVWQPYIAQPYDEENGIRIAGGHIDLPKG 223
15 -59.000d3dg6a2 c.1.11.0 (A:125-366) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  21  2.............................................................................................................................TDRMRVSHMLGFDDPVKMVAEAERIRTYGINTFKVKVGRPVQLDTAVVRALRERFGAIELYVDGNRGWSAAESLRAMREMAD--LDLLFAEELCPADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAFERTSRHELSNFLDMSDDLLTVPLQISDGQLHRRPG 224
16 -58.700d4dyea2 c.1.11.0 (A:121-375) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  18  1..............................................................................................................AVRDEVPITALITRADAP----GATPADLPKAMAEHAVRVVEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEE--LDLEYLEDPCV--GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRAI-DSMYYLHADDIIEPLHLENGRLRVPSG 228
17 -58.600d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  21  2.............................................................................................................................KEQVEVGVSLGIADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDE--YDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLKVARGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSASRYWERDLIQEPLEAVDGLMPVPQG 219
18 -58.300d2p8ba2 c.1.11.0 (A:126-369) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  28  3.............................................................................................................................HEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVNDIAIRVDVNQGWNSANTLTALRSLGH--LNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVELTGPLKFTKDI--GNLHYDVPFIRLNEK 221
19 -58.100d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  1.............................................................................................................................QAANYRAAPLCNGDPDDLILKLADM--PGEKVAKVRVGLEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDRDRIAFLEEPCKTRD--DSRAFARETGIAIAWDESLREPDFA--FVAEEGVRAVVIKPTLGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDA. 216
20 -57.500d3dgba2 c.1.11.0 (A:133-374) automated matches {Pseudomonas fluorescens [TaxId: 220664]}  ali model 3D-neighbors follow..  26  3.............................................................................................................................RDALPVAWTLASDTAKDIAEAQKMLDLRRHRIFKLKIGGEVDRDLAHVIAIKKALGSASVRVDVNQAWDEAVALRACRILGG--NGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLSWDELFGPLLLTEDILAEPPVYRDFHLHVSKA 225
21 -57.100d3i4ka2 c.1.11.0 (A:133-374) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  25  3.............................................................................................................................RDKVDVTWALGVLPLDVAVAEEERIEEFGNRSFKLKMGGDPAEDTRRVAELAREVDRVSLRIDINARWDRRTALHYLPILAE--AGVELFEQPTPADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQFAASTKAISYGELFGPQLLKDTYIVQEFEYKDGQVAIPQG 225
22 -56.500d3gd6a2 c.1.11.0 (A:123-374) automated matches {Oceanobacillus iheyensis [TaxId: 221109]}  ali model 3D-neighbors follow..  19  3.............................................................................................................................KEKIKVCYPIFREEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGRVRIKYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTAAMAHLGCSLTNINHTDPTGPELYVGDVVKNRVTYKDGYLYAPDR 228
23 -55.200d4g8ta2 c.1.11.2 (A:134-442) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  17  1..............................................................................................DGQQRDAVEMLGYLFFIG---DRKKTTLAYQQENDPCDWYRVRMTPESVVRLAEAAYKYGFNDFKLKGGVDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKIGKQLKGV---LAYAEDPCGAEQREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIHWIWQEGNQRLTKEPFQIKGGLVEVPKK 258
24 -53.300d3vc5a2 c.1.11.0 (A:134-419) automated matches {Thermobispora bispora [TaxId: 469371]}  ali model 3D-neighbors follow..  19  6..................................................................................................................AVPYSAYLFYKHPGKPEDRFGPALDPDGIVAQARLLIEYGFRSIKLKGGVPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDGV---LEYLEDPTP--GIDGMARVAAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYGGLVRSAHIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACHTPWQDGQDVVAPGALRFVDGAVPVPDG 239
25 -52.700d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}  ali model 3D-neighbors follow..  14  4................................................................................................................PEAIPLFGQSGDDRYI---------AVDKMILKGVDVLPHALINNVEEKLGFKVRWLSDRILSLRSSPRHPTLHIDVYFDMDPVRCAEYIASLEKEAGLPLYIEGPVDAGNKPDQIRMRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDGGIHNIVDAVLYCNKHGMEAYQGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNI................ 237
26 -51.100d2zada1 d.54.1.0 (A:2-124) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  100  2..RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGG............................................................................................................................................................................................................................. 123
27 -50.100d3ik4a1 d.54.1.0 (A:2-126) automated matches {Herpetosiphon aurantiacus [TaxId: 316274]}  ali model 3D-neighbors follow..  24  2.TTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVRGWRKLAAMLDHEHEAAAARCGLEMAMLDALTRHYHMPLHVFFGG............................................................................................................................................................................................................................. 125
28 -49.800d3ozya2 c.1.11.0 (A:133-387) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  19  4.............................................................................................................................TRGVRAYASSIYLTPDQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGDVEILVDANQSLGRHDALAMLRILDE--AGCYWFEEPLSIDDIEGHRILRAQTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRGGITEALAISASAASAHLAWNPHTF-NDIITVAANLHLVAASPHPAMFEWDTHNDLMTRLASYDLKLENGLVQPPQG 226
29 -49.300d3q4da1 d.54.1.0 (A:1-124) automated matches {Cytophaga hutchinsonii [TaxId: 269798]}  ali model 3D-neighbors follow..  26  1.MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLDIVSNSLLMDAIYGNSCIKSAFNIALYDLAAQHAGLPLYAFLGG............................................................................................................................................................................................................................. 124
30 -48.500d3dg6a1 d.54.1.0 (A:1-124) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  26  1.MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIQYFAPALIGLTLTEREVAHTRMARTVGNPTAKAAIDMAMWDALGQSLRLSVSEMLGG............................................................................................................................................................................................................................. 124
31 -48.200d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  17  1.MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAQPDYVQETLVTERFIIQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSLTEFFGP............................................................................................................................................................................................................................. 126
32 -48.100d3bjsa2 c.1.11.0 (A:166-410) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  20  1............................................................................................................................SKRRIPAYAGLGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGEVDILTDANTAYTMADARRVLPVLAE--IQAGWLEEPFACNDFASYREVAKITPVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKGGITEGIRIAAMASAYRIPINAHSS-ATGLNHAATIHFLAATENAGYFEACVSKFFRDMFGTSFEIGADGCVEPPDA 226
33 -48.100d2ovla2 c.1.11.0 (A:130-362) automated matches {Streptomyces coelicolor [TaxId: 100226]}  ali model 3D-neighbors follow..  20  2.............................................................................................................................DPVVPVYAGGIDLPVADLKTQADRFLAGGFRAIKMKVGRDLKEDVDRVSALREHLGSFPLMVDANMKWTVDGAIRAARALAP--FDLHWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNGGYTTFRKVAALAEANNMLLTSHGVHD------LTVHALASVPHRTYMEAHGF--GLHAYMAEPMAVTDGCVSAPDR 216
34 -48.100d4h83a2 c.1.11.0 (A:148-385) automated matches {Marine actinobacterium [TaxId: 312284]}  ali model 3D-neighbors follow..  19  2.............................................................................................................................RNELPMIAIGGYEPLGSIADEMHNYQELGLAGVKFKVGGSAAEDAARITAAREAAGDFIICIDANQGYKPAVAVDLSRRIAD--LNIRWFEEPVWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWGGPTAWLRTAAIATSYDVQMGHH------EEPQVSTHLLASQPHGTIAECPDRDPFWWNMITNRPKLNNGTLTLSDR 221
35 -47.600d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  22  1..................................................................................................................GYPAYTTSPGWLGY----------SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGDIAMAVDANQRWDVGPAIDWMRQLAE--FDIAWIEEPTSPDDVLGHAAIRQGIPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEAIEFVDHLHQHFLDPVRIQHGRYLAPEV 224
36 -47.400d3i6ea1 d.54.1.0 (A:6-132) automated matches {Ruegeria pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  24  2EQKIIAMDLWHLALPVVSARDHGIGRVGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARVAHCTEAKAALDSALLDLAGRISNLPVWALLGG............................................................................................................................................................................................................................. 127
37 -46.300d3r1za1 d.54.1.0 (A:3-127) automated matches {Francisella philomiragia [TaxId: 484022]}  ali model 3D-neighbors follow..  25  2..KIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIEIFAPVILGSDLSDYKQTLELAFKVMFNSAAKMAIDLAYHDLLAKEQDISVAKLLGA............................................................................................................................................................................................................................. 125
38 -46.100d5xd7a2 c.1.11.0 (A:131-362) automated matches {Vibrio sp. [TaxId: 1116375]}  ali model 3D-neighbors follow..  19  1............................................................................................................................KNNTCKAYCGGIDFPLEKLLNNICGYLESGFNAVKIKIGENMQEDIDRIKAVRELIGDITFMIDANYSLTVEQAIKLSKAVEQ--YDITWFEEPTLPDDYKGFAEIADNTAIPLAMGENLHTIHEFGYAMDQAKLGYCQPDASNGGITGWLKAADLITEHNIPVCTHGMQE------LHVSLVSAFDTGWLEVHSF---PIDEYTKRPLVVENFRAVASNE 215
39 -46.000d4hnla2 c.1.11.0 (A:116-399) automated matches {Enterococcus gallinarum [TaxId: 565653]}  ali model 3D-neighbors follow..  16  3.............................................................................................................................RTAIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGDYMETTLKMFAAIKEKYGQFQMLHDVHERLHPNQAIQFAKAAEP--YQLFFLEDILPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQGGITPALKLAHFCDAMGVRIAWHTPSDSPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEK 247
40 -45.800d4hpna2 c.1.11.0 (A:124-378) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  21  3.............................................................................................................................RESVRAYATGSFDRVSDNASEMAERRAEGFHACKIKIGFGVEEDLRVIAAVREAIGDMRLMIDANHGYTVTEAITLGDRAAG--FGIDWFEEPVVPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGGGFSEIQKIATLATLHGVRIVPHVW-GTGVQIAAALQFMAAMTPDPVRVNPIEPIMEQAVLREPLEAVNGVVTIPDG 235
41 -45.700d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  3.............................................................................................................................REEIPVYASFQSQWISRSVSNVEAQLKKGFEQIKVKIGGSFKEDVRHINALQHTAGSITMILDANQSYDAAAAFKWERYFSEWT-NIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHNGIDEFRDCLQLARYFGVRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFQPSKGMVHIPKG 234
42 -45.500d3rita1 d.54.1.0 (A:1-125) automated matches {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  28  1.MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALHDRLGWLMGRDIRTLPRLCRELAELPAAPAARAALDMALHDLVAQCLGLPLVEILG.............................................................................................................................................................................................................................. 124
43 -45.500d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  26  1.MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHVLKPALLGKSLAGYEAILHDIQHLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGG............................................................................................................................................................................................................................. 125
44 -45.400d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  21  2MFKIEAAEIVVARLPLKFRFETSFGVQTHKV-VPLLILHGEGVQGVAEGTMRPMYREETIAGALDLLGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGTLLGG............................................................................................................................................................................................................................. 127
45 -45.400d3fvda1 d.54.1.0 (A:2-127) automated matches {Roseovarius nubinhibens [TaxId: 89187]}  ali model 3D-neighbors follow..  24  1..RITRLTVFHLDLPLAKPYWLSGGRLDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPLRAGIATLAPHLLGLDPRSLDHVNRVMDLLPGHSYVKSPIDMACWDILGQVAGLPLWQLLGG............................................................................................................................................................................................................................. 126
46 -45.300d2p8ba1 d.54.1.0 (A:1-125) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  26  1.MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLHTLTPALIGQNPMNIEKIHDMMDNIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGG............................................................................................................................................................................................................................. 125
47 -45.200d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}  ali model 3D-neighbors follow..  17  1.MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGE-GWGECVTGPLYSSEYNDGAEHVLHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGS............................................................................................................................................................................................................................. 125
48 -45.200d4hcha2 c.1.11.2 (A:127-382) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  18  2.............................................................................................................................RDKVLAYGSIGLATPEDYGRFAETLVKRGYKGIKLHTWPDVKMDLKACAAVREAVGDIRLMIDAFHWYSRTDALALGRGLEK--LGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHHRAEWIKAGACDILRTGVNDGGITPALKTMHLAEAFGMECEVHG------NTAMNLHVVAATKNCRWYELEYDDGHDYLKSLSDPMDRDGFVHVPDR 238
49 -45.100d4j1oa1 d.54.1.0 (A:1-126) automated matches {Paracoccus denitrificans [TaxId: 318586]}  ali model 3D-neighbors follow..  23  1.MKIAEIHVYAHDLPVKDPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSALGARAALAEMAPGLIGANPLQPLVLRRRMDGLCGHNYAKAAIDIAAYDLMGKHYGVRVADLLGG............................................................................................................................................................................................................................. 126
50 -44.700d3dgba1 d.54.1.0 (A:4-132) automated matches {Pseudomonas fluorescens [TaxId: 220664]}  ali model 3D-neighbors follow..  20  2ASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTILAYGNESPDSIKTNIRFVAPLLIGQDASNINAAMLRLEQIRGNTFAKSGIESALLDAQGKRLGLPVSELLGG............................................................................................................................................................................................................................. 129
51 -44.600d3toya2 c.1.11.0 (A:133-360) automated matches {Bradyrhizobium sp. [TaxId: 114615]}  ali model 3D-neighbors follow..  20  12.........................................................................................................................................DARDDERTLRTACDEHGFRAIKSKGGGDLATDEAMIKGLRALLPDIALMLDFNQSLDPAEATRRIARLAD--YDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKGGITGWLNVAGQADAASIPMSSH------ILPEASAHVLPVTPTAHFLEV---LDFAGAILTEPLRVIDGKV-TAKG 210
52 -44.300d3i4ka1 d.54.1.0 (A:5-132) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  30  2.LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVGPWWGGESVETMKALVDYLAPVLIGRAVSELAGIMADLERVARARYAKAAVDVAMHDAWARSLNVPVRDLLGG............................................................................................................................................................................................................................. 128
53 -44.200d3sjna2 c.1.11.0 (A:129-373) automated matches {Shewanella pealeana [TaxId: 398579]}  ali model 3D-neighbors follow..  19  3.............................................................................................................................RDKIRCYGTIPADKPEDNVAIVQGLKDQGFSSIKFGGGDDPDTDYAIVKAVREAAGEMEVQIDLASKWTCGHSAMMAKRLEE--FNLNWIEEPVLADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRGGITEMKKIYDIAQMNGTQLIPHGF-STGILLHASVHFLAACEQGTLMEFSSSSPLFTSLVKNQLQFDNGFVAVSDA 227
54 -42.900d2poza2 c.1.11.0 (A:119-384) automated matches {Mesorhizobium loti [TaxId: 266835]}  ali model 3D-neighbors follow..  18  3.............................................................................................................................RDRVRAYANGWYDTPDEFARAVERPLKEGYGALKFYPLEAIELAYRRVKAVRDAAGEIELMVDLSGGLTTDETIRFCRKIGE--LDICFVEEPCDPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTGGLMETKKICAMAEAYNMRVAPHVC-GSSLIETATLQLEANITNFMIHEHFKADDGYVEVLENPPSISSGYFEMPNG 245
55 -42.700d4kema2 c.1.11.0 (A:142-390) automated matches {Azospirillum sp. [TaxId: 137722]}  ali model 3D-neighbors follow..  19  2............................................................................................................................ADDGVWVYAAGGYKDVKALQDEMRSYRDRGYRVVKMKIGAPLAEDLRRIDAVLEVVGGDNLCVDANGRFDIDTAIAYGEALKP--YGLFWYEEAGDPLDYALQAELAKHYDRPMATGENLFSHQDARNLIRHGGMDWLQFDCALYGLVEYLRTLDMLKENGWSSRRVV---PHGGHQMSLNIAAGLHLGGNESYPDVF--PFCGFADGIAVEDGRVRLPDL 227
56 -42.600d2pgwa1 d.54.1.0 (A:4-131) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  18  1.VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAP-----DQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGG............................................................................................................................................................................................................................. 128
57 -42.600d2hzga2 c.1.11.0 (A:129-393) automated matches {Rhodobacter sphaeroides [TaxId: 1063]}  ali model 3D-neighbors follow..  13  3.............................................................................................................................SHGKRPYASLLFDTPQETLERARAARRDGFAAVKFGWGPTVAADADQIMAAREGLPDGDLMVDVGQIFDVEAAAARLPTLDA--AGVLWLEEPFDAGALAAHAALAGRARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRGGLGPAKRVADAAQARGITYVNHTF-TSHLALSASLQPFAGLEADRICEYPAPQQLALDITGDHIRPAEGLIRAPEA 231
58 -42.400d4k8ga2 c.1.11.0 (A:112-402) automated matches {Novosphingobium aromaticivorans [TaxId: 279238]}  ali model 3D-neighbors follow..  18  3.............................................................................................................................RDGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGKALNYVPKLFEELRKTYGDHHLLHDGHHRYTPQEAANLGKMLEP--YQLFWLEDCTPAENQEAFRLVRQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGGGLTHLRRIADLASLYQVRTGCHGATDSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGET 256
59 -42.400d4e6ma2 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella enterica [TaxId: 90371]}  ali model 3D-neighbors follow..  16  3.............................................................................................................................NEKLRTYASQLLVTPEEYAEAARAALDDGYDAIKVDPLDQLKMGEARIAAMREAMGDADIIVEIHSLLGTNSAIQFAKAIEK--YRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLGGITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMSIRELCTHDYQPENGYYVAPEQ 257
60 -41.900d2gdqa2 d.54.1.1 (A:5-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  1..KIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLP------ALHVGFTKRIIPFLLGKQAGSRLSLVRTIQK--WHQRAASAVSMALTEIAAKAADCSVCELWGG............................................................................................................................................................................................................................. 114
61 -41.200d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  2.SHMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVEL-EEEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTREE-------LQKILPAGAARNALDCALWDLAARRQQQSLADLIG.............................................................................................................................................................................................................................. 115
62 -41.200d4h83a1 d.54.1.0 (A:20-147) automated matches {Marine actinobacterium [TaxId: 312284]}  ali model 3D-neighbors follow..  14  1.LTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDEH---ETMFDIDRIIHEELAPTLIGQDAMAIERLWDSGYKVT-GLVALAAVNTAIWDAVGKALKMPLWKLWGG............................................................................................................................................................................................................................. 128
63 -40.600d3toya1 d.54.1.0 (A:2-132) automated matches {Bradyrhizobium sp. [TaxId: 114615]}  ali model 3D-neighbors follow..  16  3.AAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFA---YTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFR-VGMAVSGLDMAFWDALGQLAGKPVVELLGGSAR.......................................................................................................................................................................................................................... 131
64 -40.600d4dyea1 d.54.1.0 (A:1-120) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  21  1.MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWG--------APVAAIVRRMAPDLIGTSPFALEAFHRKQHMVP-GYAAIAAVDVACWDAMGKATGQSVTDLLGG............................................................................................................................................................................................................................. 120
65 -39.700d3gd6a1 d.54.1.0 (A:1-122) automated matches {Oceanobacillus iheyensis [TaxId: 221109]}  ali model 3D-neighbors follow..  18  1.MKITDLELHAVGIPRHTGFV--------NKHVIVKIHTDEGLTGIGEMSDFSHLPLYS-VDLHDLKQGLLSILLGQNPFDLMKINKELTDNF-GSFIRNGIDNALHDLCAKYLDISVSDFLGG............................................................................................................................................................................................................................. 122
66 -37.500d3bjsa1 d.54.1.0 (A:37-165) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  17  1.MKITKINAIPLSYRLGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP----GRSPGAITSLIHNTIAPMLIGMKATDCVGAWQRVHRMQGAALAISGIDMALWDIRGKAANMPLYELLGG............................................................................................................................................................................................................................. 129
67 -36.900d4e6ma1 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella enterica [TaxId: 90371]}  ali model 3D-neighbors follow..  23  1.MKITSIEVFDCELKKRDQ------TMSSYNPVLIRVNTDSGLSGIGEVGLA---YGAGAKAGVGIIRDLAPLIVGEDPLNIEKIWEFFFRKT-FYAGMSAIDIALWDIKGKYLGVPVYQLLGG............................................................................................................................................................................................................................. 122
68 -36.700d4hpna1 d.54.1.0 (A:1-123) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  21  1.MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPA-------RPNAAVVQAYSGWLIGQDPRQTEKIWAVLYNAL-SLTALSGIDIALWDIKGKHYGASISMLLGG............................................................................................................................................................................................................................. 123
69 -36.500d4hcha1 d.54.1.0 (A:1-126) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  20  1.MIITDVEVRVFRTTTRRHSDSAGGPAHQVEQAMLTVRTEDGQEGHSFTAP-------EIVRPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRGSRTLAVVDCALWDLAGRSLGQPVYKLIGG............................................................................................................................................................................................................................. 126
70 -36.200d3vc5a1 d.54.1.0 (A:1-133) automated matches {Thermobispora bispora [TaxId: 469371]}  ali model 3D-neighbors follow..  23  1.MLIREVRVTPVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGD--------LAHLEQVRAAAARLPGLDVYALHRIYRRVADVVGANRVFAAFEVACLDIQGKAAGRPVADLLG.............................................................................................................................................................................................................................. 133
71 -36.000d5olca1 d.54.1.0 (A:2-123) automated matches {Zobellia galactanivorans [TaxId: 63186]}  ali model 3D-neighbors follow..  17  1..KIKKIEPYVISHKLDTPFYFSQWQYDTRKICIVKITLDDGTYGWGEGYGPA-------AVIKSGIDFFTPFLLGKEAIGHEVLWQEMYRRS-LQAAISAIDVALWDIKGKLLNLPVSVLLGG............................................................................................................................................................................................................................. 122
72 -34.900d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  12  2..TIIALETHDVRFPTSRELDGSMNPDPDYSAAYVVLRTDGAEDLAGYGLVFT--IGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSAIGAVINAAWDLAARAANKPLWRFIAELT........................................................................................................................................................................................................................... 139
73 -34.500d4g8ta1 d.54.1.0 (A:2-133) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  20  3.PIITEMQVIPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPGG--------EKIRQTLEDAKPLVIGKTLGEYKNVMNTVRQTFNDHHVVTAIEAAMLDLLGQFLGVTVASLLG.............................................................................................................................................................................................................................. 132
74 -34.400d3ozya1 d.54.1.0 (A:4-132) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  18  1..KITEVKAHALSTPIPERMRVESGLKLNRQMILVEVRTDEGVTGVGSPSG----PYDLAVLKRAIEDVIGPQLIGEDPANINYLWHKVFHGE-GIAAMSGVDIALWDLKGRAMNQPIYQLLGG............................................................................................................................................................................................................................. 129
75 -33.500d4k8ga1 d.54.1.0 (A:1-111) automated matches {Novosphingobium aromaticivorans [TaxId: 279238]}  ali model 3D-neighbors follow..  23  1.MKITAARVIITC--------------PGRNFVTLKIETDQGVYGIGDAT----LNGRELSVVAYLQEHVAPCLIGMDPRRIEDIWQYVYRGA-TMRAIAAVDMALWDIKAKMAGMPLYQLLGG............................................................................................................................................................................................................................. 111
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.