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Query: TM0007 TM0007 281888 Purified-2004-07-19, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSEGEFQYLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERSEKARRILHERLERLIKGEDPKRYRIRARITLKLKETSSKHRVWLPFPKESLQIESVKLLRTSHKSYYISPNDVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVAGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYSYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGVPARWQSGWYINPIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEVLast
1 -21.100d1x3za_ d.3.1.4 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  8  6.......................................................................................................DSIAKMLLIKYKDFILSKFKKAAPVENIRFQNLVHTNQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTDYLVKELLRY------------------------------KQDFFKWCNKPDCNHCGQNTSENMTGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPR----NDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVW-------NREDHVWCEYFSNFLNWVHVDSCEQ........................................................................ 232
2 -19.900d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  1................................................................................................................................................................................GDSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNN---PEKLLETRCGRCGEWANCFTLCCRALGFEARYVW-------DYTDHVWTEVYSPSQQWLHCDACED........................................................................ 191
3 -13.900d1rlla2 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}  ali model 3D-neighbors follow..  14  6................................................................................................................................................................................................................GNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQFLSICLSILDRSLNFRRDAATDVASRNDPKYVGRVLSAMINSN-TYTGGRDPRSWDGSVEILKNVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDNFHVWNEGWFVR-GWQVLDATPQERSQGVFQCGPASVIGVREGDVQLN--FDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIGRYISTKAV 287
4 -12.000d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  5............................................................................................................................................................................................................................................................TPEQTHAYLHHIDDPGPPSLANLDRLIDAHLRRVAFERPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAHLMLRLYLAEGEFL-VDVGFGSANP.................................................................... 136
5 -11.700d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  19  2............................................................................................................................................................................................................................................................MTSFLHAYFTRLQPLGVPTVEALRTLHLAHNCAIPFEREIQLDETALEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLHRLLLVDVEDEQWI-ADVGFG........................................................................ 127
6 -11.600d4guza1 d.3.1.0 (A:1-278) automated matches {Mycobacterium abscessus [TaxId: 561007]}  ali model 3D-neighbors follow..  14  5............................................................................................................................................................................................................................................................DELQLDEYLAFIDGDRSPTLETLRRLQRGHVLNIKWEKHVALDIPAVQAKLLRSPRGGYCYEHVALFGAVLQRLGFDFYGIQGRVQMGATTIRHGMLVVRLAAEQWL-CDVGFGTS...................................................................... 131
7 -9.420d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase {Mycobacterium smegmatis [TaxId: 1772]}  ali model 3D-neighbors follow..  14  2...............................................................................................................................................................................................................................................................DLGGYLTRIDGRPRPDLGTLHAIVAAHNRSIPFENVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMRADDAHNVLSVAVPGADYL-VDVGFG........................................................................ 129
8 -7.530d5mu9a2 d.3.1.18 (A:156-293) automated matches {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}  ali model 3D-neighbors follow..  9  1................................................................................................................................................................................................................................................................MSVSSAEAQAAIARNPHIHGTYRGYILDGLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAVGKWGADSWKANGFAIFKAGDAAHAYNFTLTKDHADI-FEPQNGG....................................................................... 124
9 -6.970d4gq4a1 d.389.1.1 (A:2-230) Menin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  4...................................................................................................................................................................AAQKTLFPLRSIDDVVRLFA--------AELGREEPDLVLLSLVLGFVEHFLAVNRVGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELV----------KKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTK--DSSGVAFAVVGACQALGLR--------VHLALSEDHAWVVF--GPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLK............................................... 203
10 -6.820d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  10  6.............................................................................................................................................................................................................................................................................TDYFRIYRVINSLLISQNADPASA------------------SMYFSTFGAFILQQHKVKAVPKGGLAVTGAGENFHCWVEA-----GWA-IDPAFSEGTDALAVPAKMFQRPLSA..................................................... 121
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.