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Query: TM0008 TM0008 281889 Crystal|NMR-2001-04-01, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVLSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVELast
1 -80.700d3krva_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  27  3KVYDVTAPIYEGMPVYKNKPEKQPKR--TTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVN--DRITKDDIAHLDIQEGDFVLFKTKNSFED-----AFHFEFIFVAEDAARYLADK--QIRGVGIDALGIERA----QEGHPTHKTLFSAG------VIIIEGLRLKDVPEGR-YFMVAAPLKLVGTDAAPARVLLFDR 204
2 -79.700d4coga_ c.8.8.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}  ali model 3D-neighbors follow..  23  1TLWDISPPVSPATPVWPGDTPVAVERVWRMEAGSPVNVARLTLSPHTGAHCDAPLHYDADGAPIGAVPLDTYLGPCRVIHCIGAA--PVVRPADVEAALDGVPPRVLLRTYARAA----VEQWDSNFCAVAPDTVDLLAAH--GVKLIGIDTPSLDPQ---ESKTMDAHRRVRAHR------MAILEGIVLDDVPPGD-YELIALPLKFATLDASPVRAVLRA. 205
3 -67.800d2b0aa1 c.8.8.1 (A:1-185) Hypothetical protein MJ0783 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  23  1EILDLTQTLINFP--RPGDPELRIIEK----KIDGFIVSEIIMGSHLCTHIDYPKHVGLENRIPFKDGI--IKGKGYCISL-----------DDFPGNKLPACDILLIYTGFSKYWGRDE--YFEKIPEI--PFLDDIIKS--NIKCVGIDACTIG--------GFEEHKRLLSNN------ILIIENLNENKNLVGKSFYFLGLPLKIFDIDASPIRCIAIL. 185
4 -6.010d3n9ka_ c.1.8.3 (A:) automated matches {Yeast (Candida albicans) [TaxId: 5476]}  ali model 3D-neighbors follow..  12  11...............................................GVNLGGPSLFEQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRV----IDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIEL................. 183
5 -5.520d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  10  1...................................MKVTIIGASGRVGSAT------------ALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDVMTYKALVDSKFERNQVF.................................................... 144
6 -5.380d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}  ali model 3D-neighbors follow..  11  1.................................................HFPGRAAYGNGGFRFADMSHRGICIPSGIYGIDMTGPVPTQEDISRVLEESDQIEVLLIGTG-------------VELLRLPEELRVLLWEKRISSDTM------------STGAAVRTFNVLLAEDRAVAALLFAVE..................................... 118
7 -5.260d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9..FDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPA--LPRKLDSVFEFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVT----GALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSAGVPLDTHDVFQFREKAYFCQDRFYWRVSSRSELNQVDQV......................................................... 182
8 -5.240d4yuca1 c.95.1.0 (A:6-185) automated matches {Corallococcus coralloides [TaxId: 184914]}  ali model 3D-neighbors follow..  14  2.......................FPLPFKIAGLGRYVPADVVLSSDLEKKYDLPPGWCVEKQGIRE---RRWVKDETASFMGAEAAKEAVRDAGLKLEDI---DLIINASG----------------PEQAVPDGGPLVQRELGLGRSGVPSITVNASCLSFFVALDVAANYLNMRRY--KRILIVSSDISSVALDFRKPENFTL------GDAAAAAVVTLPE 174
9 -5.240d5p9va_ c.66.1.1 (A:) Catechol O-methyltransferase, COMT {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  24..........................LEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLE---LGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDK--------------LNGASQDLIPQLKKKYDVDTLDMVFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLADNV................................... 169
10 -5.190d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  16  34..........................................FLSHA--HLD---HSRMINYLDPAVPLYTLKETKMILEMIGLNKNDVIKVGEISDHDAYGASALLIRTPDHFITYTGDLRLH----GHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPA........................................................... 175

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.