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Query: TM0009 TM0009 281890 Purified-2001-02-14, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIGPRDLLNIALRIESTGYSYYKNLTEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEETPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQTIIDEEKKHLRDLLRLEVLast
1 -57.400d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  31  1.MKVSDILTVAIRLEEEGERFYRELSEHFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDT--SEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNQKTVKKIIDQEKEHLRKLLEMKR 142
2 -51.800d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}  ali model 3D-neighbors follow..  17  1.YTLAEFLAHAIALETEAAERYVELADMMEADTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQ----YRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADKRLGADFAAEEAEHVVALDKWIE 144
3 -50.200d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  21  10.FSLEELLGMAIKAEIGAREFYKSLAEKIKIELKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPV----ARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEKRLMRYLADMERGHYYTLRAEYE 150
4 -29.100d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  12  6..STLENLKAAIAGETGAHAKYTAFAKAAREQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPT-----------------AAPSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEVHVFTRAKLAESVHAERY..... 134
5 -27.500d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  15  7..RTEKNILTAFAGESQARNRYNYFGGQAKKDISDIFAETADQEREHAKRLFKFLEGGDLEIVAA-----------------FPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREARVFASIAVAEEFHEKRFLDFAR 139
6 -25.500d3pwfa1 a.25.1.1 (A:2-134) automated matches {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  6..MTKKFLEEAFAGESMAHMRYLIFAEKAEQNIAKLFRAIAYAEFVHAKNHFIALGKLGK------------------------------TPENLQMGIEGETFEVEEMYPVYNKAAEFVRTTHYALEAEKIHAELYRKAKE 125
7 -25.000d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  17  6..KTAENLKQGFIGESMANRRYLYFAKRADEEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATD--------------------KPIGTLEQMIESAIAGETEWTQMYPGFAKVAREAEWFETLARAEKSHAEKFQNVLK 136
8 -24.000d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  19  8..KVIEVLNKARAMELHAIHQYMNQHYSLDDELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKE----------------GKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEARLFERIIEEEQAHLTYYENIGS 141
9 -23.900d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  5..ADNAALCDALAVEHATIYGYGIVSALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQLPMQV--------------SSAADAARLAVRMENDGATAWRAVVEHAETRVFASTALTESAVMATRWNRV.. 131
10 -23.900d4kvsa_ a.25.1.6 (A:) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}  ali model 3D-neighbors follow..  14  13..AYSRINAIVIEGEQEAHDNYIAIGTLL-PDHVEELKRLAKMEMRHKKGFTACGKNLGVE----ADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISFYHTYIPVSDPRKITEGVVKDEYTHLN....... 142
11 -23.000d3b3hb_ a.25.1.0 (B:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  14  6..DVLKLLNEQLTSELTAINQYFLHSKMQDNELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRL----------------FSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCREARLLEQILADEETHIDYLETQLQ 139
12 -22.500d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  57..TITDACEILLILKDNLAGHHRELVEHFEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRV-------QHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEAGLIDRIARDEVRHEEFFANLVT 194
13 -22.200d4cvra_ a.25.1.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  6..KVINYLNKLLGNELVAINQFFLHARMFKNRLNDVEYRESIDEMKHADRYIERILFLEGLPNLQDL----------------GKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSRDMMIEILRDEEGHIDWLETELD 139
14 -21.900d1o9ia_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  14  35..............ETTGMMSFQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDRDMLKFLLARETQHQLQFMKAQE 190
15 -20.300d1zpya_ a.25.1.5 (A:) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  16  15..RDMHRAIISLREELEAVDLYNQRVNACKDKLKAILAHNRDEEKEHAAMLLEWIRRCDPA................................................................................. 74
16 -18.700d2v8ta_ a.25.1.3 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  10  36..............EMSTLMNYMYQSKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPLGFAKDVRVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNREMIGYLLVRGGVHAAAYGKALE 197
17 -17.100d2uw1a_ a.25.1.2 (A:) automated matches {Hedera helix [TaxId: 4052]}  ali model 3D-neighbors follow..  10  57..DYFVVLVGDMITEEALPTYMSMLNRAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDM------RKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHAHICGSIASDEKRHATAYTKIVE 205
18 -17.000d3oj5a_ a.25.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 419947]}  ali model 3D-neighbors follow..  14  3..KFHALMQEQIHNEFTAAQQYVAIAVYFDSELAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPG---------------VDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEQFMQWFLQEQIEEVALMATLVR 137
19 -16.000d4iwka_ a.25.1.1 (A:) Non-hem ferritin {Pseudo-nitzschia multiseries [TaxId: 37319]}  ali model 3D-neighbors follow..  10  3..ELLDLFNRQVTQEFTASQVYLSASIWFDQNMAAYMLAESAEEREHGLGFVDFANKRNIP-------------IELQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHFLNPFHLQQVNEEDKIGSILA 139
20 -15.100d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper (Trichoplusia ni), H chain [TaxId: 7111]}  ali model 3D-neighbors follow..  17  20..SCRNSMRQQIQMEVGASLQYLAMGAHFSKDFAQLFFDAASEEREHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSS-----------KGGVEALEHALSMESDVTKSIRNVIKACEDDSLTGDFLEEQYKGQRDLAGKAS 165
21 -15.100d3bvfa1 a.25.1.1 (A:1-166) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  13  5..DIIKLLNEQVNKEMNSSNLYMSMSSWCYTHAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTS---------------ISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKFLQWYVAEQHEEEVLFKDILD 139
22 -14.600d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  5..KMVEALNRQINAEIYSAYLYLSMASYFDSIFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYA---------------VEEPPSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKFLQWYVAEQVEEEASALDIVE 139
23 -14.500d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper (Trichoplusia ni), L chain [TaxId: 7111]}  ali model 3D-neighbors follow..  11  24..NVATELQAYAKLHLERSYDYLLSAAYFNNYFSKLFKKLSDEAWSKTIDIIKHVTKRGDKMNFDQ---------HSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRNSLEEEFIEDHAEKIRTLAGHTS 171
24 -14.000d3a68a_ a.25.1.0 (A:) automated matches {Soybean (Glycine max) [TaxId: 3847]}  ali model 3D-neighbors follow..  13  31..ESESAVNEQINVEYNVSYVYHAMFAYFDRDLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPL----------SDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGVETEYLGEQVEAIKRISEYVA 173
25 -13.900d2v2pa_ a.25.1.1 (A:) automated matches {Horse (Equus caballus) [TaxId: 9796]}  ali model 3D-neighbors follow..  12  10..EVEAAVNRLVNLYLRASYTYLSLGFYFDRDVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQD--------------LQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQALESHFLDEEVKLIKKMGDHLT 148
26 -11.900d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  14  22LADQETLLIDHKNCEFKAASTALSLIAKYNTDLINMMSRLAREELVHHEQVLRLMKRRG-------PLRPVSAGRYASGLRRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEERFYHGLLKSEARHYQGYLKL.. 159
27 -11.300d3pvtb1 a.25.1.2 (B:2-237) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  7  2..QLTAYTLRLGDNCLVLSQRLGEWCGHAPEEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGN----ADTIARQYFIDAWHVALFTRLMESRDPAAISAKAIKEARYHLR....... 134
28 -10.500d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  14  19.......LRDIYYAEQQITKALPKMIEQATRDLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAID---IKEADETAGEIADKTVLDAAIVANAQAVEHYEIARYGTLIAWAEEVRFLTTNLNEEKAANTKLNTV.. 157
29 -10.400d3olja1 a.25.1.2 (A:66-350) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  85........................SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAF-EGIFFSGSFALMPGLTFSNELISRDEGLHCD....... 206
30 -9.390d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  9  86....NETMKVVSNFEYNAIAATGMLWDSAQAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGKRVFSDGFISGDAVECSLNLQLVGEACFTNPVTEWAAANGDPTVFLSIETDELRHMA....... 234
31 -9.190d2rccb_ a.25.1.0 (B:) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  15  41...FKKIIGLLAFLDSVQTDYSMRAAEYLTSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHEFIIDGYEKFVDNPTPKTFLESIVYDVILE--GLNFYSGFAKMVSTSTMINYINRDEQLHVY....... 188
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.