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Query: TM0010 TM0010 281891 Purified-2005-03-03, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAGFPTGLKWELAARQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVDTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKEKRCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVELast
1 -71.600d3iam11 c.142.1.1 (1:2-249) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  49  7.............................................................................................................GLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM................................................................................................................................................................................................................................................................. 248
2 -41.300d3iam13 a.29.12.0 (1:334-438) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  42  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................RVSMVDAMWNLTRFYAHESCGKCTPCREGVAGMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPS........................................................................ 102
3 -34.700d3iam12 d.15.13.0 (1:250-333) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  36  1..............................................................................................................................................................................................................................................................................................................................................................KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPE............................................................................................................................................................................. 84
4 -21.500d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  32  7.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RIEYEMHTPDPKADP---DKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHIPHIEACINCGQCLTHCPENAIYEA........... 83
5 -20.000d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  25  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SHSVKIYDTCIGCTQCVRACPLDVLEKAAQIASSPRTEDCVGCKRCETACPTDFLSIR........... 65
6 -19.600d5abra_ c.47.1.0 (A:) automated matches {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  34  1...PEFHIFICAQNSCGAKGAEGVYNAFAQVLIQKNLTNRIALTTTGCLGPCQAGANVLIYPGAVMYSWVEPADAAIIVEQHLLGGEPYADKLTPAE.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 102
7 -18.500d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  24  40..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VDFDLCIADGSCINACPVNVFQASEKKADPVNEQACIFCMACVNVCPVAAIDVK........... 101
8 -18.500d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  37  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVINEACISCGACEPECPVNAIS-SGDDRYVIDADTCIDCGACAGVCPVDAPVQA........... 55
9 -17.500d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  34  3......HVFVCVQGSCAQRGSREVFQAFMEKIQTDPLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVERLV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 98
10 -16.600d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  30  15.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QWVPENCIQCNQCAFVCPHSAILKGYKFRIQINTLDCMGCGNCADICPPKEKALV........... 95
11 -16.500d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  30  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HVICEPCIGVKSCVEVCPVECIY-DGGDQFYIHPEECIDCGACVPACPVNAIYPEEDVPEQWK... 65
12 -16.400d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  28  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQ... 65
13 -16.200d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  26  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKITDDCINCDVCEPECPNGAIS-QGEEIYVIDPNLCTECPQCQQVCPVDCIPLDDANVESKDQL. 71
14 -16.000d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  33  4..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VNPEKCDGCKACEYICPNDLMTKEKMKAYNREPDMCWECYSCVKMCPQGAIDVR........... 64
15 -15.700d3mmca1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  21  10...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AVKEYASWMDIENEVVKLCPTGAIKWDGKEL-TIDNRECVRCMHCINKMPKALKPGD........... 65
16 -15.100d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  20  73.PTGKYHLQVCATLSCKLAGAEELWDYLTETLGEVTPDGLFSVQKVECLGSCHTAPVIQVNDE-PYVECVTRARLEALLAGLRAGKRL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 162
17 -14.600d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  36  18.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTRHPNGLEKCIGCSLCAAACPAYAIYERYAKVYEINMLRCIFCGLCEEACPTGAIV............. 89
18 -12.800d3c7bb6 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  9................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EAIRKTCPSTVAACPTGALKPDMKNTIKVDVEKCMYCGNCYTMCPGMPL.............. 60
19 -12.700d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  18  31..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VNRNLSIYDGPEQRFCPAGVYEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEG....... 93
20 -12.100d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  28  103.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VIDEEMCINCGKCYMTCNYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDC.............. 157
21 -9.830d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  26  14............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTVDRTKCLLCGRCVNACGKNTETYAMKFLNKFDDTNCLLCGQCIIACPVAALSEK........... 82
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.