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Query: TM0012 TM0012 281893 Purified-2001-08-29, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKFPINSDQEVAVLVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREGLast
1 -83.200d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  27  1................GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAG. 159
2 -20.500d5abra_ c.47.1.0 (A:) automated matches {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  21  2...........................................................................................EFHIFICAQNSCGAKGAEGVYNAFAQVLI----QKNLTNRIALTTTGCLGPCQAGANVLIPGAVMYSWVEPADAAIIVEQHLLGG 91
3 -19.600d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  27  3.............................................................................................HVFVCVQGSCAQRGSREVFQAFMEKIQTDPQ----FMTTVITPTGCMNASMMGPVVVVPDGVWYGQVKPEDVDEIVEKHLKGG 91
4 -7.080d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  4................TILEKQSVELRDQLMVF-----QERLVEFAKKHNSELQASPRSKFMHMCSSIGIDPKHLFTVNDFYYEVCLK-----VIEICRQTK-DMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSLECFE---IFQIRGKKFLRSVPNE............. 145
5 -7.070d4g38a4 d.134.1.0 (A:426-570) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  15  6..............................................................................................SMACVSFPCPMAEAERFLPSFIDNINLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGPRMYKENITEPEILASLDEL.... 109
6 -6.860d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  17.....................................PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFAVFELADSGHHDHMVCVDTGEVIEFMDAEIEKRQKEIVRERGFELVDHNLVL-----YVRK................................. 132
7 -6.800d4etsa_ a.4.5.0 (A:) automated matches {Campylobacter jejuni [TaxId: 32022]}  ali model 3D-neighbors follow..  14  6...................DVLLERFKKILRQGGLKKQREVLLKTLYHSDTHYT--PESLYMEIKQALNVGIATVYRTLNLLKKYELANKPHHDHMICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQL-----YGVCG................................ 143
8 -6.800d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  13  17...................................................................................VLTRHPNGLEKCIGCSAAAC--AYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIGLCEEAPTGAIVLGYDFEMADYEYSDLVYG...... 107
9 -6.510d2xiga_ a.4.5.0 (A:) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  18  8...................ESILERLRMSIKKNGLKKQREEVVSVLYRSGTHLS--PEEITHSIRQK-NTSISSVYRILNFLRRYEIAAKEHHDHIICLHCGKIIEFADPEIENRQNEVVKKYQAKLISHDMKM-----FVWC................................. 142
10 -6.500d3c7bb5 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  1.........................................................................................KGEYGLSHTQGWICHAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHASDIA........................ 69
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.