Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: TM0014 TM0014 281895 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .
# Score Template Links and tools%idFirst MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKILast
1 -8.620d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  13  5...................................FPEQKAGEAINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVANLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAAS............................................................................................ 165
2 -8.250d2pyba_ a.25.1.1 (A:) Dodecameric ferritin homolog {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}  ali model 3D-neighbors follow..  10  1....................................................................................................................DDLDAIQLKLQELL--ASLHIFYSNLRGIHWNIKDTNFFVIHKKTQKLYEYIEKIIDIVAERSRMLGYDSEFRYSEFMKKSFIKELDIESTSNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDYGTA.................................. 126
3 -7.880d3t9ja_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}  ali model 3D-neighbors follow..  9  2........................................................................................................................KTFEILKHLQ--ADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIAQLGHHPLVTLSEATRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY.................................... 124
4 -7.690d2cf7a_ a.25.1.1 (A:) automated matches {Streptococcus suis [TaxId: 1307]}  ali model 3D-neighbors follow..  10  11........................................................................................................................DSKAVLNQAV--ADLSVAHSILHQVHWYMRGRGFMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTN.................................. 132
5 -7.410d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}  ali model 3D-neighbors follow..  10  5........................................................................................................................NVVEVLNKQV--ANWNVLYVKLHNYHWYVTGPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVGTSKESAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADM.................................... 126
6 -7.270d3kwoa1 a.25.1.0 (A:1-147) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  11  2........................................................................................................................SVTKQLLQMQ--ADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKS-KDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAF.................................... 124
7 -7.270d3iq1a_ a.25.1.0 (A:) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  13  15........................................................................................................................KLANALNNLL--ANYQVFYMNTRGYHWNIQGKEFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIHTDSIDGRSSMQGLVDGFSILLHQQRDILELAGETGDEGTSAL.................................... 136
8 -7.250d3ak8a_ a.25.1.1 (A:) automated matches {Salmonella enterica [TaxId: 439842]}  ali model 3D-neighbors follow..  9  15........................................................................................................................ATVELLNRQV--IQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKTP-LKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTA..................................... 132
9 -7.240d4a25a_ a.25.1.0 (A:) automated matches {Kineococcus radiotolerans [TaxId: 131568]}  ali model 3D-neighbors follow..  10  23.......................................................................................................................SRLNAGLQEV---VDLTALHLQGKQAHWNIVGENWRDLHLQLDTLVEAARGFSDDVAERMRAVGGVPDARPQTVAASRIG-PDEIDTRACVEAIVALVRHTVDTIRRVHDPIDAEDPASADLLHAITLELEK........................... 154
10 -7.230d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}  ali model 3D-neighbors follow..  12  8........................................................................................................................AICEQLRQHV--ADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGI.................................... 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.