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Query: TM0016 TM0016 281897 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRMSLKSWKEIPIGGVIDKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGFNYDYCKGCGLCANVCPKQAIEMRPETEFLSEEGLast
1 -33.600d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  32  10........................PRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAEVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYE. 100
2 -31.300d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  24  1......................TSQFEKRGVAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKRIQINTLDCMGCGNCADICPPKEKALVMQPLDTQRD. 104
3 -30.500d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  27  37..................................IVGVDFDLCIADGSCINACPVNVFQWYDTKADPVNEQACIFCMACVNVCPVAAIDVKP......... 102
4 -29.700d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  19  1.................................SHSVKIYDTCIGCTQCVRACPLDVLEMVPWDASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTR. 74
5 -29.200d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  35  28....................................QIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSPHIEACINCGQCLTHCPENAIYEAQS........ 85
6 -27.900d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  31  98...............................EQVVAVIDEEMCINCGKCYMTCNDSGIQFDPETHLPTVTDTCTGCTLCLSVCPIDCIRMVSRTT...... 165
7 -27.500d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  25  2...................................SFVNPEKCDGCKACEYICPNDLMTLDKEKAYNREPDMCWECYSCVKMCPQGAIDVRGYVDYSPLGG 74
8 -23.800d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  26  1...................................SLKITDDCINCDVCEPECPNGAISQGEEIYV-IDPNLCTECPQCQQVCPVDCIPLDDANVESKDQ. 70
9 -23.400d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  34  1...................................AYVINEACISCGACEPECPVNAISSGDDR-YVIDADTCIDCGACAGVCPVDAPVQA.......... 55
10 -23.400d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  26  1...................................PHVICEPCIGVKSCVEVCPVECIYDGGDQFY-IHPEECIDCGACVPACPVNAIYPEEDVPEQWK.. 65
11 -22.500d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  27  3.....................................VVTDNCIKCKDCVEVCPVDCFYEGPNFLV-IHPDECIDCALCEPECPAQAIFSEDEVPEDMQ.. 65
12 -22.100d3mmca1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  10..................................AVKEYASWMDIENEVVKLCPTGAIKWDGKEL-TIDNRECVRCMHCINKMPKALK............. 62
13 -21.900d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  18  31.....................................VNRNLSIYDGPEQRFCPAGVYEFVPLERLQINAQNCVHCKTCDIKDPSQNINWV.......... 89
14 -19.700d1ti6b2 d.58.1.5 (B:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}  ali model 3D-neighbors follow..  20  7....................................VIDVAKCQDCNNCFMGCGNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQK.. 125
15 -19.300d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  28  15....................................TVDRTKCLLCGRCVNACGKNTTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS............ 80
16 -18.800d3c7bb6 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  12..........................................RKTCESTVAACPTGALKPDKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPEN........ 65
17 -18.800d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  1MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHCTFVGYCSEVCPKHV.............. 113
18 -18.400d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  21  33...............................EDRQKLDGLYECILCACCSTSCPSYWWNGDKQLQDPFSLYRCHTIMNCTRTCPKGL.............. 115
19 -18.200d2bs2b1 a.1.2.1 (B:107-240) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  24  37..................................QEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVCMTLLACHDVCPKNL.............. 116
20 -17.200d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  83..........................ETEQNGKLEWLIRKDGCMHCEDCLKACPSAGAIIQANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYK.. 158
21 -16.700d1y5ib_ d.58.1.5 (B:) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  166........................KAMYSQFENTFMMYLPRLCEHCLACVATCPSGAIYKREDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEK.. 243
22 -16.700d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  16  106......................................KTKDLEDYESVISACPYDVPRKVAESNQ---MAKCDMC-ACVTSCPTGAMNFGDLSEMEAM.. 172
23 -16.300d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}  ali model 3D-neighbors follow..  21  1................................PKYTIVDKETCIACGACGAAAPDYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE........ 71
24 -15.300d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  25  1...................................PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPD-DCVEEAIDSCPAEAIVRS.......... 58
25 -14.100d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  18  1................................AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKDEELYNCAKEAMEACPVSAITIEE......... 65
26 -13.400d4id8a_ d.58.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  18  1.................................LTIHVDQDKCQGHARCKALAPELFDLDDYGNAHVVPADLIDKAWLAKSNCPENAIDITED........ 65
27 -13.300d3iam32 d.58.1.0 (3:96-246) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  26  80....................................ILDRERCIHCKRCVRYFEEVP-FIERGVHTFIFGLPSGFSGNITDICPVGALL............ 141
28 -10.100d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  20  62..........................KHTTLGERGALREAMRCLKCADCQKSCPTHLMIFSDNPLGLTCGMVCPTSDLCVGGCEEGSINIGGLQQFASEVF 162
29 -9.080d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}  ali model 3D-neighbors follow..  12  13.....................................RTNMTCVGCGYHVYKWPELEEGGRAPEQNALGLDF-LAVTLTPAMTNVVTIMVVPDKACVVNSG 93

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.