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Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -6.450d5ee0a1 c.37.1.0 (A:16-303) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  17  6..FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVD--GIFHVL..................... 111
2 -6.050d4jspa1 d.144.1.4 (A:2002-2021,A:2114-2549) mTOR kinase domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  234......VMSMVGYILGLGDRHPSNLMLDRLSGK------ILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFV.................. 330
3 -5.990d1sx5a_ c.52.1.2 (A:) Restriction endonuclease EcoRV {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  8  102..........IKFTLGGYTSF-----IRNNTKNIVYPFDQYIAH----WIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEG........ 201
4 -5.740d3vzha1 d.58.53.2 (A:1-212) CRISPR-associated protein Cas5d {Streptococcus pyogenes serotype M1 [TaxId: 301447]}  ali model 3D-neighbors follow..  8  1MYRSRDFYVRVSGQRALFTNPATKGGSERS--SYSVPTRQALNGIVDAIY............................................................................. 48
5 -5.320d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  18  1....................................PL--YVINFI-CVLISFLASLAFYLPAESGE-KMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLN... 87
6 -5.300d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  13  4........................................FVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVVIN... 87
7 -5.230d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}  ali model 3D-neighbors follow..  17  2FLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPALMDVVGIDTGHHGRDVMAEKDDRRSAIDALYEAKRLGQKNGKGFYAYEA..................................... 98
8 -5.170d1h67a1 a.40.1.1 (A:28-134) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  30......................................GVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIAL.................. 100
9 -5.150g1kve.1 d.70.1.2 (A:,B:) SMK toxin {Halotolerant yeast (Pichia farinosa) [TaxId: 4920]}  ali 3D-neighbors follow..  17  7.MQKSTTIAAIAGCSGAAT------------------FGGLAGGIVGCIAAGILAILQGFEVNWHNGGGGDRSNPVXGEATTIWGVGAD...................................... 76
10 -5.130d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  6  59............................................GLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAXIKVDVAEQQKYPLKDAQRAHEILESR... 138
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.