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Query: TM0001 TM0001 281882 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
1 -3.520[Y] KOG2992 Nucleolar GTPase/ATPase p130  ali follow..  23  633....KKKRGSYRG--------GQIDVGVNSIKF........ 653
2 -3.070[S] KOG4455 Uncharacterized conserved protein  ali follow..  31  30......EYCRTSMAAISGCAAGILGLSTLGFLFYF...... 59
3 -3.040[S] COG1950 Predicted membrane protein  ali follow..  12  59............DILTFNLLSGFFTFMIAVVCFSIAA.... 83
4 -3.030[A] KOG1780 Small Nuclear ribonucleoprotein G  ali follow..  13  33.....RGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIV 68
5 -2.870[H] COG0521 Molybdopterin biosynthesis enzymes  ali follow..  22  70LVLTTGGTGPAKRDVTPDATLAVADREMPGFGEQMR..... 105
6 -2.590[T] COG2336 Growth regulator  ali follow..  20  1MILNIRKMGNSQGVILPKSLLGQIGAVDS............ 29
7 -2.540[S] COG3791 Uncharacterized conserved protein  ali follow..  26  2...........KKTYHGSCHCGAVRFSANL........... 20
8 -2.410[J] COG0219 Predicted rRNA methylase (SpoU class)  ali follow..  16  97LMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMN..... 132
9 -2.390[O] KOG0546 HSP90 co-chaperone CPR7/Cyclophilin  ali follow..  24  84...GFSIYGRDEKFKLKHSRPYLLSMNSNSSQFFITTAAA. 128
10 -2.370[Z] KOG3430 Dynein light chain type 1  ali follow..  16  56....DKKYNPTWSCIMGRNFGSYLTHETKHFIYFYLGQVAI 92

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.