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Query: TM0003 TM0003 281884 Purified-2001-12-06, from T.maritima

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
# Score Template Links and tools%idFirst METVKAYEVEDIPAIGFNNSLEVWKLFPASSSRSTSSSFQLast
1 -4.330[S] KOG3098 Uncharacterized conserved protein  ali follow..  14  4..TTRRYELLSAAMLGFGHLCIMVGYDSGFFDQEPTN... 38
2 -4.020[E] COG4401 Chorismate mutase  ali follow..  13  31ICEENEIDPENVAQVILTVTEDLTATFPAKALRRLAG... 67
3 -3.600[K] COG0781 Transcription termination factor  ali follow..  35  94...LAVYELLDVPKVVINEAIEVAKVFGADESHK...... 128
4 -3.240[S] COG2001 Uncharacterized protein conserved in bacteria  ali follow..  25  106.........KGLMLVGQLNKFEIWS............... 121
5 -2.650[J] COG0048 Ribosomal protein S12  ali follow..  13  82...IRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKY. 117
6 -2.530[S] COG3790 Predicted membrane protein  ali follow..  25  63...........IHGVGFRPQKVLWQGI............. 78
7 -2.410[R] KOG3263 Nucleic acid binding protein  ali follow..  57  236...............GFNRPLD.................. 242
8 -2.360[O] KOG0549 FKBP-type peptidyl-prolyl cis-trans isomerase  ali follow..  20  46..........DQLHMHYTGTLLDGTEFDSSRTRNEEFTFT 75
9 -2.240[S] COG4731 Uncharacterized protein conserved in bacteria  ali follow..  21  6..............VGVGAELTAFRILAAISCE....... 24
10 -2.180[D] COG2917 Intracellular septation protein A  ali follow..  20  137..............IAFWLPQNIWVNFKVFGLTALTLIF. 161
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.