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Query: TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13, from T.maritima

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQLast
1 -70.100[H] COG1441 O-succinylbenzoate synthase  ali follow..  20  1...MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCL-REGEREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD-----------CELPQMPSVAFGVSCALAELADTLPQAANYRTAP-----------LCNGDPDDLILKLADM--PGEKVAKVKVGLEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDRHRIAFLEEPCKTRD--DSRAFARETGIAIAWDESLREPDFA--FVAEEGVRAVVIKPTLGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDA. 315
2 -67.900[E] COG3799 Methylaspartate ammonia-lyase  ali follow..  16  1.MQIKDVLLAPGSGAFFYDDQAAISIRVPANSLSIGLVLVDDTVVWGDMMSVQYSGAGGRDALFETSRVVMPRLIDVDVSRYLDACAKVFEPIGPLAIEYGVSQALLRAAAHLQRTTMAEIVCSEFDLPLPTHRVPILNVDKMILKAVDVLPHGLINSRQKFGVDGQTFMEFVKWVVTRTYHPVLHFDVYIGLEPQRIADFICRVADSVDFTLNIESPADFGSTQAQIENNRGSSARIVVDERCNTFEDIRLFAEAKATHLVQIKTPDGSIADTARAVLLCKTNKVGAYVGSCTETDLSAQASVHVSVATQADMMLAVDEAFSIVGNEQNRLLAMLNRRRTQNEK 415
3 -57.300[MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily  ali follow..  16  1.MKITSVETLRTE--------------EFSNVLWVRIHTDAGVIGLGET------FYGAGAVEAHIHDVLAGRLLGRDPMRIEAHSRELVNLP-EYRAASAIDLALWDIFGKVCNQPVHQMLGGLHDRIPVYNTCA-AFMTDAGALAENLLEQGISAMKIWPFEQLRAALLPFEQIRKRVGRMQIMVEFHSLWNLPTIKKIARELEA--FDPTWYEDPIRMNSVSALSELAASTSVPICASETLGSRFPYKDMLEAGAIGIVMTDLVWGGLTEGRKIAALADTYHRPYAPHDC-TGPVAYAAAVHSSFSQTNTMIQESAFYTGWYCELVTNLPVIENGFVLPMEG 376
4 -13.800[G] COG0148 Enolase  ali follow..  15  7.ATIEEIAAREI-------------DSRGRPTIEAEVRLESGAHGIAQVPSGASTGSFEAKAVRNVTEKIAPVVEGLDAFDQMAVDQAMIDRDGTDNAILGVSLATAKAAAAELAIPLYRYLGGAHNNVDFQEFMIMPVGAETFKEALRWGAEVFAVLGKVLKENLTSNQQALDILIEAIEQIALAMDIGGSHSPQEFIDYQAKLVS-QYPIVSIEDGLHEDDWESWKGLTTSLKTQLVGDDMVTNPVRLQKSIDLGVANAILIKLNQIGLSETLETISLATRHSYRSVISTIADLAVATRVGIKTGSLCRSERVAKYNRLLRIEDEL................. 415
5 -11.400[G] KOG2670 Enolase  ali follow..  15  1.MSILKIHAREI-------------DSRGNPTVEVDLFTSKGLTGIYEALKTRYMGKGVSKAVEHINKTIAPALVKLNVTEQEKIDKLMIEMDGTENAILGVSLAVCKAGAVEKGVPLYRHIGGSHAG-AANFREAMRIGAEVYHNLKNVIKEKYGKDATNVGPNILENKEGLELLKTAIGKAVIGMDVSRYISPDQLADLYKSFIKD-YPVVSIEDPFDQDDWGAWQKFTASAGIQVVGDDTVTNPKRIAKAVNEKSCNCLLLKVNQIGVTESLQACKLAQANGWGVMVSHIADLVVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKFAGRNFRNP.. 431
6 -8.720[J] KOG2334 tRNA-dihydrouridine synthase  ali follow..  12  282.......................................................................................................................VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGSKPELIHDILATLKRNL-DVPVTCKIRLLKSPADTVELARRIEKLGVPALAVDRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMV--ARGAMWN........................................................................ 454
7 -8.530[J] COG0042 tRNA-dihydrouridine synthase  ali follow..  11  40..................................................................................................RYGAGMAVSEMMSCNPTAKSQNRMVHEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGRYPDVIEDILKAVVNAV-NVPVTLKTRTGWDTDNCLSIAQLAEDCGIQALALHGRTRACEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMI--GRPAQGRPWIFQEIQH............................................................... 248
8 -8.230[R] COG1411 Uncharacterized protein related to proFAR isomerase (HisA)  ali follow..  11  13........................................................RNVVLAKGGVRENYRPVSDSSAVCRTSAPLEIVEALRPREVYIADLNAL----QGKGPLDINAEVIREVSLKADTMLDFGVSC----LGDVDRALSIAGTAV---LGTETGKLSVIRDAVARCPGRISVSIDVKYG-IPEDPFEIVKLLNELPLKDLIFLD-ASGFDPEFLHKLAETSIHDVLLAGGVRGMEDLFTLDRLGIKGALVATAIHSGEVPLEVMNLGLEQIK............................................................ 242
9 -8.090[E] COG0107 Imidazoleglycerol-phosphate synthase  ali follow..  16  42.................................................................................................EQGADEITFLDITASVDGRDTLHTVERMASQVFIPLTVG-----RSVQDIRNLLNAGAD--KVSINTAAVFNPEFVGEAADRFGSIVVAIDAKK--TGLDAVLWAKKMEDLGAGEILLDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLASIFHFGEYTVPEAKAYLASRGIVV......................................................... 255
10 -7.610[J] KOG2335 tRNA-dihydrouridine synthase  ali follow..  11  71.............................................................................................................................DADASLILQFGVDDPVILE-KAAQLVGPYVDGIGINCGDEPEKVHKLVRAVKSTLGSFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVDRSSFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMS--ARGLLEN........................................................................ 238

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.