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Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -62.900[D] COG0239 Integral membrane protein possibly involved in chromosome condensation  ali follow..  29  1...MYFLYVGIFGALGGMCRYAMNLWLGG----GDFPSATLAVNLIGCFLLAFIMPFLAEKSRISLVLLNGIGTGFIGAFTTFSAFSVDTIELLQQGEVLAISYILVSLIGGLVMVKFGRRFSNKLL 121
2 -9.470[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  14  1..MANRTEKAAKTVKGTNPQFLVEKIIRQ--------------RIYDSMYWKEHCFALTAELVVDKGMDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLT. 110
3 -8.620[T] KOG2290 Rhomboid family proteins  ali follow..  13  656..LWLSLFLHAG-LVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQF------GILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLGFISGLFLSFAFL 787
4 -8.610[R] KOG2888 Putative RNA binding protein  ali follow..  14  28...............GNESSMNLNALIANIQSSSYFKVHLFKLKTYHEVVVKHMEPWERGSRKTSGQTGMCGGVRGVGAGGIVSTAYCLLYKLYTLRLTRKQINGLLNHTDSAYIRALGFMYLRYT. 145
5 -8.060[P] KOG0252 Inorganic phosphate transporter  ali follow..  11  76.......VAFCGTLAGQL----FFGWLGDKLGRKKVYGITLMLMVLCSLGSGLSFGHSANGVMAT--FRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF---LAGGIVSLIV..... 186
6 -7.810[S] COG3216 Uncharacterized protein conserved in bacteria  ali follow..  10  50........VAAGVAAGVFASFF------PLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGMLHGHMQSDERPAHLSEMLQTLSISQLWMLCGAVPLGLVFGLLFYGITRCGM 170
7 -7.530[P] KOG1418 Tandem pore domain K+ channel  ali follow..  14  255KVERDIRGEGWR--YGNLAKTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKWAQKVRYSTFPVKWALFIVFFFMVVCSFVSLSTIGF---DVIPEHPRTACGNGLLEIKICYISVMINGAL..... 434
8 -7.500[S] COG3610 Uncharacterized conserved protein  ali follow..  10  30...RALNACGITGTFGWMAYWTLMQ----------MDSGTGASSLAGAFVVAILSHFFAKHKKMPIT--IFNVPGIV------GGLAYQAVRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFN 139
9 -7.340[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  11  1......MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVNV--------------SPSASSEQMRTLF--GFLGKIDELRLFPPDDSPLPVSSRV-CFVKFHDPDSAVVAQHLTNTVFVDRAL 105
10 -7.110[R] KOG2140 Uncharacterized conserved protein  ali follow..  15  181.IIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQEVLCLEMLTLLLERPTDDSVEVAIGFL------ECGLKLTQ... 306
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24