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Query: [E] COG0040 ATP phosphoribosyltransferase, from VFDB

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAKLast
1 -104.000[E] COG0040 ATP phosphoribosyltransferase  ali follow..  100  1MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK 213
2 -72.900[E] KOG2831 ATP phosphoribosyltransferase  ali follow..  23  7LEDRLLFAVPKGRLYESCVNVLKGSDIKFR---RNPRLDIALVQNLPIALVFLPAADIPRFVGTGRVHLGITGQDQIAEARLRIEELVDLQFGGCKLQVQVPESGDITSVGRRIVTSFEYLVAEYFVDSGIKTEISFVSGSVEASCALGIADAVVDLVESGETMRASGLKPIETVMSTSAVLVRSSNCSSELEPLLQTIITRIRGYIIAQQYV 239
3 -7.410[R] COG1427 Predicted periplasmic solute-binding protein  ali follow..  12  24.........................................KLLEKDCHFLIQTPATLNREMKAGRIQVGPISSFAYAENVDEFVLMPNLSVGPVGSIFLYTKRPLEELEGSRIALTTTSATSVHLLK-GVNVTYDEMDPSFDEMMQDHDGCLLIGDEAIVTSWREEVETYRYDLGEL-AVFAVRKDAIARQRAILEELYTAFVLSKEKNRKE 214
4 -7.250[K] COG3888 Predicted transcriptional regulator  ali follow..  9  71.EKLLRIGCLRSTFVSVAKNYSESKGIDLI-------------------RFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTARED 270
5 -6.860[P] COG4521 ABC-type taurine transport system, periplasmic component  ali follow..  11  22.AVNVTVAYQTSAVAQADNTFAKESGATVD-------------------RKFDSGASIVRALASGDVQIGNLGSSASQQVPIEVFLLASKLGNSEALVVKKTISKPEDLIGKRIAVPFISTTHAALKHWGIKPGQVEI-PAIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDS-APTLDVWVVRKDFAEKHPEVVKAFSKSAIDAQQ..... 233
6 -6.690[P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components  ali follow..  12  76....LIIAKEKG--------FFAKYGLT------------------NVELSKQASGSARDNVEIGSAGGGIDGGQWQMNQKIPMYVLCQLITHGNGIAIALFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLNMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEEEYLAMRSDWVDQHPKATKALLKGLMEAQQ..... 301
7 -6.520[R] COG2107 Predicted periplasmic solute-binding protein  ali follow..  8  30..............................................EIEHVIEDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSEISLDGKRIAVPGRYTTANLLLKLAVEEPVEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDW-GLNAIRRDLSVEVQEEFLRAMRE........... 197
8 -6.310[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain  ali follow..  8  25.PQNIRIGTSQGEL----------VGFDIDLAKELCKRI-----NTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQ-QPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRA........ 241
9 -5.920[E] KOG0503 Asparaginase  ali follow..  11  447..AMINAAVAEGDP--KKINNLKAYGADLSGTNHDQRTALHLACQLGVKYLLQNGVSVHVRDRYDRTPLLEAVAQLLINCGAHLTGSSR---VGEQLCAAAARGSMI--------------RLKSYQYAGADLAQSDPSGALHVAALHGFPEVVQYVLPYFENPNELGLTAMDYAERGGHAAVME............................ 627
10 -5.350[E] COG4812 Ethanolamine utilization cobalamin adenosyltransferase  ali follow..  12  21.....EIHLPADRLTPSARELLESRHLRIKFIDEQGRLFVDDEQQQPQPVHGLTSSDCRQPVAKKPDTLHLSAEKMVAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLDIRSRLGNIMRADALGEPLGCQAIVGLSDEDLHRLSDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSFEVLRPDILQALNRLSSTV...... 241
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.