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current user: public |
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Query: [S] COG1937 Uncharacterized protein conserved in bacteria, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | MKHDQPIVPRKDEETKLLQNRLRRIEGQIRGIAQMVEDDRYCTDILVQISAANKALKNVGLQVLEHHTAHCVVDAAKNGEDDVMEDLLKAIRQFSKT | Last |
1 | -51.800 | [S] COG1937 Uncharacterized protein conserved in bacteria | ali follow.. | 100 | 1 | MKHDQPIVPRKDEETKLLQNRLRRIEGQIRGIAQMVEDDRYCTDILVQISAANKALKNVGLQVLEHHTAHCVVDAAKNGEDDVMEDLLKAIRQFSKT | 97 |
2 | -6.120 | [S] COG5369 Uncharacterized conserved protein | ali follow.. | 11 | 21 | ............KDEHELLRYIVPFKNWVIGLLNLFSLENLSMNEKYQVFVVLNSLQDPFVQFLRHEDLLSVMQMISKRDSTPYGMLNITLKVFNTM | 125 |
3 | -6.120 | [R] KOG1293 Proteins containing armadillo/beta-catenin-like repeat | ali follow.. | 11 | 21 | ............KDEHELLRYIVPFKNWVIGLLNLFSLENLSMNEKYQVFVVLNSLQDPFVQFLRHEDLLSVMQMISKRDSTPYGMLNITLKVFNTM | 125 |
4 | -5.780 | [K] COG5221 Dopey and related predicted leucine zipper transcription factors | ali follow.. | 9 | 1 | MSLPLKPLTIDSNNKQL--SKQKKFRANVERALERFDSVTEWADYIASLGTLLKALQS-SPYQVSRRLTSSLSPALPAGVHQKTLEVYTYIFEHIGL | 108 |
5 | -5.540 | [K] COG1510 Predicted transcriptional regulators | ali follow.. | 10 | 29 | .....................MPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANI............................. | 75 |
6 | -5.520 | [U] KOG3229 Vacuolar sorting protein VPS24 | ali follow.. | 10 | 71 | ...............RKAINRIYTSKAHLNSIQMQMKNQLSTLRVAGSLQKSTEVLQAMQSLVRYPELAGIMRD---SKEMMKAGIIEEMLDETMDS | 150 |
7 | -5.470 | [S] COG5660 Predicted integral membrane protein | ali follow.. | 16 | 3 | .........................................CEVAREALSALDGEREAVPSVRVDEHLGECSACRAWFDQVADQARDLRQL...... | 53 |
8 | -5.460 | [O] COG5536 Protein prenyltransferase, alpha subunit | ali follow.. | 13 | 116 | .............HRQKILSLTKNYERELEFTKKMFEIDSK---ILQNFNDYSQELKLTNELLEKDNHRFYVLFETSKVVSWSLEEELNYLKDKILF | 213 |
9 | -5.430 | [S] COG0718 Uncharacterized protein conserved in bacteria | ali follow.. | 12 | 12 | ............KQAQQMQEKMQQMQEEVAKLEVTGESGAGLVKVCRRVEIDPSLLVEDDKEMLEDLIAAALNDAARRIDETQKEKMASVS...... | 97 |
10 | -5.360 | [O] KOG4098 Molecular chaperone Prefoldin, subunit 2 | ali follow.. | 10 | 20 | ...............QQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVL--PQLVENKDFIAKTIQMVTNDLSK | 99 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |