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Query: [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a, from VFDB

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNSHLFLKSGFPRAPLQNGLGRYVCQLQRITLKFCKNNGSSRGMRDFIENHLLDFAKENPGIVVYVKPRRHRTPVLVGEYLNGEREWMSCRNSTQEEISKWIDLLKTQNGSSSSLRLRKMWHTEVPSIQGPWTPFLLRSPDAQGQAYPSAEASKPLDTPQTATEKLIELFRQQQLEAGEEAHDVLNKKRAELast
1 -88.300[J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a  ali follow..  100  1MSNSHLFLKSGFPRAPLQNGLGRYVCQLQRITLKFCKNNGSSRGMRDFIENHLLDFAKENPGIVVYVKPRRHRTPVLVGEYLNGEREWMSCRNSTQEEISKWIDLLKTQNGSSSSLRLRKMWHTEVPSIQGPWTPFLLRSPDAQGQAYPSAEASKPLDTPQTATEKLIELFRQQQLEAGEEAHDVLNKKRAE 192
2 -42.600[C] KOG3446 NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit  ali follow..  19  1............MAAAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA................................................................................. 99
3 -6.720[N] COG1843 Flagellar hook capping protein  ali follow..  8  25....................................DASAATLNYESFLKLLVAQMKNQDP-----------TQPMDATQQIAQLATFSQVEQTI--KTNKNLESLLQRTALSEADAIGRTVTSADGKTTG............................................................. 107
4 -6.350[R] COG3054 Predicted transcriptional regulator  ali follow..  17  96...............................TTTIVNTDDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNKEEGSAVIVLDKDGRVQWVKDGALTQQEVQQVVDLLHKLLSK................................................................................ 185
5 -6.260[J] KOG3291 Ribosomal protein S7  ali follow..  13  68.......................IVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHGENP-LQVLVNAIINSGPREDSTCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR.............................................................. 204
6 -6.180[I] COG1182 Acyl carrier protein phosphodiesterase  ali follow..  10  1...........................MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPPVLDGELVGALRPSDAPLTTRQQEALALSDELIAELKAHDVIVIAAPMYNFNSTQLKNY........................................................... 108
7 -5.470[L] COG3728 Phage terminase, small subunit  ali follow..  9  7.............................................RKFALA--------------LMSGKNKTASALAAGYSAKTARVKGSQLAKDPEVLAFIARKQCETVEVDEVPVYR........................................................................ 67
8 -5.290[M] COG1213 Predicted sugar nucleotidyltransferases  ali follow..  15  1...........................MEAVIL------AAGFGSR------LGHHTREIPKALLKIGKRPLIYYTVQTLMENGIRDVVVVTGHKGYVLREYLSQ....................................................................................... 66
9 -4.920[O] COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes  ali follow..  10  49..............NSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLT................................................................................................................................ 98
10 -4.910[R] COG3596 Predicted GTPase  ali follow..  8  23............................................VSERILQQINQLTHYEPVIGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQTIVDLPG................................................................................. 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;