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Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -87.100IDP02119 gene: rpiA; ribose-5-phosphate isomerase A [Francisella tularensis subsp. tularensis SCHU S4] FTT1208 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  35  1MFFNKKNNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYRDKI---KTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGFPLPIEVIPMARSYIARQIVKLGGQPVYR------EQTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFLKPADTVIMATKDSNIVV.... 223
2 -78.300IDP92040 ribose 5-phosphate isomerase, putative [Toxoplasma gondii ME49] TGME49_039310 [Toxoplasma gondii ME49]  ali follow..  36  1.....MNPQDKAKQAVGYFAVDYVRSGMKVGLGTGTTAKFVVERIGQRMQEGSLDLLCVPTSEATRKQAESLGIPLTTLDGIDCLDVAIDGADEIPPTLGLVKGRGGALLREKMIAAAAKTFIVAADETKLVSNGIGALPVEVVVFSGSHTKRLLKRHGGRAEFRKRAGEEDRFVTDNGNYIVDLYFTEVPDLHEMDKELKSIPGVVETGFFLDLASVCLIGKADGVATLTAER 258
3 -13.800IDP00414 gene: deoR; DNA-binding transcriptional repressor YPO1322 [Yersinia pestis CO92]  ali follow..  17  71..SDQQAKQVEEKRRIGQLAAQLIIENDTVFFDCGTTIPWIIDEIDEE-----LAFTAICYSLNTFLALQDTPLSQQSELDNICPNKAFISAAGVSIEYGATCFNFDEILLKHRAMAKSQYKILVADHSKF....................................................................................................... 214
4 -11.600IDP00219 probable deoR-family transcriptional regulatory protein YPO1938 [Yersinia pestis CO92]  ali follow..  20  77..........RQKQAIGTSAALHIPRNSCIYLDAGTTTLALARQLEDR-----DDLLVVTNDFVIANFLIEIGEAAAHSLRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISE-ASSKRVLLADASKY....................................................................................................... 211
5 -6.430IDP92053 proteasome subunit beta type 2, putative [Toxoplasma gondii ME49] TGME49_054900 [Toxoplasma gondii ME49]  ali follow..  10  15VACDRYANSSILRMKDDEDKLLLVDDDKVMGFGQIGDRLQFGDYIQKNIHLYRFRNNKKLGCAAAANFTRQQLAYYLRRSPY-HVDVMLAGYDEMGPHLYWMDYLASMVSVNKAAHGYAAYFLGGLLDRYYHPELTEEEALKIIEMCKKELMTRFIVSQASFRVK--------VATKEGIRTLDI................................................. 191
6 -6.370IDP02445 gene: speE; spermidine synthase [Yersinia pestis CO92] YPO3411 [Yersinia pestis CO92]  ali follow..  12  11...............................LHANFGQYFSVENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVP---QAKKVLIIGGGDGAMLREVSRHKNIEQITMVE-----------IDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE--FDVIISDCTDPIGPGESLFTSV-LNEGGIFVAQNGVCFLQQD.......... 200
7 -6.340IDP01531 gene: sorC; probable sor-operon regulator [Shigella flexneri 2a str. 301] SF4094 [Shigella flexneri 2a str. 301]  ali follow..  12  85.DEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHA---FYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLVTNSSTAELL...................................... 313
8 -6.110IDP05562 hypothetical protein lmo2172 [Listeria monocytogenes EGD-e] lmo2172 [Listeria monocytogenes EGD-e]  ali follow..  13  275..........DDRKVIARRSAAELEPQTILNLGVGEGVSDQLILTTEAGSVGGVPAGLADFGHAYNSEAIVDHHSQFDFYDGGGLDLSVLGLAQTDESGNVVAGCGGFI-----ISQSAKKLIFAGTFTAGGLKTRVAAGKLEI--KAKKFIKQVQQITFSGEYASTTNQTILYVTERAVFRLEMVLTEIAPGIDLEKDILGQME............................. 489
9 -6.100IDP95361 set237a-001 [Yersinia pseudotuberculosis PB1/+]  ali follow..  8  35.........FTLDYWIEKSRINSNTYLLDLACSTGFSARNIVHKTGCSAEGIDISARSIESANQLAVIAECVHFSVGNAESVSFTDNTFTHIAALVEVQRVLKQDGFLCISPFFYESEPDN................................................................................................................. 162
10 -6.100IDP95362 set237a-002 [Escherichia coli]  ali follow..  9  31TPPGAEYTIDYWIKHGCINKKSHLLD---LACSTGFSSRECFKKEGASAEGIDISESAVMVANEKAKANNLLKYYVADACDLPFEDNTFTHVIALNETHRCLNHMGSMCISNFYYRRKISD................................................................................................................. 164
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;