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Query: [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGLLast
1 -79.400IDP91448 nucleotidyltransferase/DNA polymerase involved in DNA repair [Vibrio vulnificus CMCP6] VV1_0391 [Vibrio vulnificus CMCP6]  ali follow..  17  1..MFALVDANSFYCSAEQIFRPEWRGKPVIVLS--NNDGCVVAANRQAKEAGIAKFKPYFEVKALCELVIALSSNYELYADLSSKMMDVIGRFAPEQYIYSIDESFLSFHRCFPAIKDLREHGSLIRRAVWKECRLPVCIGMGTTLTLAKIANHAAKKGVCVIDNEHQRTSILKQLEVGDVWGVGKKISTRLKHMGINSAYDLSQYAPEQARREFSVEVERTVRELNGVACKGWDTARDKKQIYSTRSVGTRITDLELLKQALSKHAAIAAHKAR--NQKSLCKAMLCFASNSPFDDKPQSFRIPTADSMQLVKIATQAATQLFPGVRYYKIGIGLIDLVNGQHEQLDL.. 358
2 -6.610IDP00787 gene: fabI; enoyl-(acyl carrier protein) reductase SACOL1016 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  3......................NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSR-PEAHLYQIDVQSDEEVINGFEQIGKDVGN-----------IDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGG----------SIVATTYLGGEFAVQNYNVMGVAKASLEAN-------VKYLALDLGPDNIRVNAISAGP-AKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK.............................................................. 256
3 -6.260IDP90705 gene: fabI; enoyl-(acyl carrier protein) reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1400c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  3.......................MKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGE-----------IDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKG----------SILTLSYLGGVKYVPHYNVMGVAKAALESS-------VRYLARDLGVKGIRVNAISAGP-ASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGV............................................................................. 238
4 -6.100IDP06465 gene: C22L; C22L [Monkeypox virus Zaire-96-I-16] NP_536475 [Monkeypox virus Zaire-96-I-16]  ali follow..  1MKVVI-------VTSVASLLDASIQFQKTACRHHCNYLSMQVVKEIEEFGTINEKKLEFDTWKDVIQN-AIVFYRVKQISISTGVLYESMMRNRTKISMYFVRDCLAFDGNPPSFRMTSCNINAYNRNKIKDLIILMNMKTCNKKIIGEFIIDNFGSVDALLSIINSNVT..................................................................................................................................................................................... 167
5 -5.610IDP01256 gene: fabI; enoyl-(acyl-carrier-protein) reductase BA_1232 [Bacillus anthracis str. Ames]  ali follow..  12  4.......................LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLE--ESLVLPCDVTNDEELTACFETIKQEVGT-----------IHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISAFSLTAVAREAKKVMTEGG----------NILTLTYLGGERVVKNYNVMGVAKASLEAS-------VKYLANDLGQHGIRVNAISAGP-AKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGV............................................................................. 241
6 -5.390IDP05676 enoyl-(acyl carrier protein) reductase [Listeria monocytogenes EGD-e] lmo0970 [Listeria monocytogenes EGD-e]  ali follow..  11  4......................SLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGK-----------LSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVR---------------YLAMDLGAIGVRVNAISAGP-ARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGV............................................................................. 246
7 -5.310IDP95176 hypothetical protein KPN_04461 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001338083 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  12  277.RALSCRQLRLHYQPIIDIKNNRCVGAEALLRWPGFDGPVMNPAEF-AENEGMIAQVTDYVVDELFYEMLYIAINLSASDFHSARLISQISE---KAHSYAVCIGQIKIEVTERGFIDVPKTTPVIQA--FREAGYEIAIGYSNLHNLHALNVDILKIDKTFVLTTNNTSHLI----AEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQYCQG....................................................................................................................................... 500
8 -5.120IDP95195 gene: wafF; WafF [Acinetobacter nosocomialis] AHB32537 [Acinetobacter nosocomialis]  ali follow..  16  6..................................................................PLISILIPVYNVEAFVKEAVLSICNQTYKNIEIIVVDDCSTDNTNIVAELAIIDPRIRLYKNDKNSKIVKTLNFALAKGEFIARMGDDISTPERL-----EKQLEFLLKNPQYYLVG........................................................................................................................................................................ 121
9 -4.950IDP95240 gene: wagS; WagS [Acinetobacter baumannii] AHB32714 [Acinetobacter baumannii]  ali follow..  10  5..................................................................NYISVGIPIYNASAYLEDAIKSVLAQSFQNFELILIDDGSTDDSKIAKSFNDSRIRVYSDGLNKKLPTRLNQIIQMAKYDYIARMADDLMDVDRL-----KNQFEYLKNNPNIDLVT........................................................................................................................................................................ 118
10 -4.830IDP01518 formate dehydrogenase, iron-sulfur subunit VC1512 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  73.............CFVHTEDGIVLHNKDLCIG-----GYCLFACPFGAPQFPKQAAFGERGKMDKCTFCAPETEPGSEEERRKYGANRIAEGKLPMCASLCSTKALL--------AGDAEKISDIFRQRVVERKGAGWTNGEDLAYDATR......................................................................................................................................................................................................... 201

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.