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Query: [R] COG0824 Predicted thioesterase, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPFTYHRTINFQDTDAAGVVYFANILSICHEGYEASLRTSGISLKEFFTNPSMAFPIVHASVDFLRPLFCGAQVIISLVPQKIGAEKFEINYEIYLADVLVAKAVTRHVCIDANTRSKQELSMEIIQWLDGYRKDTEEVERRKAREVVLast
1 -15.000IDP06291 hypothetical protein SP_1851 [Streptococcus pneumoniae TIGR4] NP_346283 [Streptococcus pneumoniae TIGR4]  ali follow..  10  26...VVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDG-----------VTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNEGRNVCKATFTMFVTGQRSEER.............................. 130
2 -14.000IDP02262 hypothetical protein FTT1532 [Francisella tularensis subsp. tularensis SCHU S4] FTT1532 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  55.................NVIHGGIIALICDDILGKHVLSI----------SKSFCMTRNLNIKYLKPTYSKVEHIFKTTVIRKGRTTVWIKVDIFEKGDLCAYADADFALLEEHHAKQKDIANYKLDDLVAHLK.............. 162
3 -9.960IDP04453 gene: fabZ; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase (EC 4.2.1.-) [Yersinia pestis CO92] YPO1055 [Yersinia pestis CO92]  ali follow..  10  42......KNVSFNEPFFQG--HFPGKPIFPGVLILEAMAQATFKSRGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVEFVKERRGLTRFTGVAKVDGEIVCTATMMCARSKPAAPAESVVVKP........................ 161
4 -9.520IDP92621 gene: fabZ; (3R)-hydroxymyristoyl-ACP dehydratase [Vibrio cholerae O1 biovar El Tor str. N16961] VC2249 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  101............................................................EAKFRKPVTPGDQLMVEVEFLKERRGIALFNGVAKVDGDVVCSAQLKCARRE.................................... 152
5 -7.400IDP92638 gene: yiiD; predicted acetyltransferase [Escherichia coli str. K-12 substr. MG1655] b3888 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  12  249......................................................IILADAHIRYSKPISGKPHAVADLRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYE............................ 322
6 -6.360IDP92090 (3R)-hydroxymyristoyl ACP dehydrase, putative [Toxoplasma gondii ME49] TGME49_121570 [Toxoplasma gondii ME49]  ali follow..  5  177............................................................GVKWKKPVVPGDTLVMEVELTAWKEKFAKATGKAFVDGKPAIEVGEMTFAL..................................... 229
7 -5.680IDP92692 thermonuclease [Staphylococcus aureus subsp. aureus VC40] YP_005290766 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  10  54...................VVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTNQDVYLEYDKEKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKYFSP---NGKYRNVFIEAQNKAKQQKLN...... 173
8 -5.450IDP02639 gene: hflK; SPFH domain-containing protein/band 7 family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0633 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  173............ESAVRQVVGENKLEQILTTNRAVITQQVRKEMEALLEKYNSGIYVSEVIMPAQAPDAVKSAFDDVIKAREDREREQNEAEAYANRVVPVAQGNAQRILDQANAYKQKIVVAQFEQLLPIYKQSPDIVMNQMYFNTI 315
9 -5.410IDP00112 gene: hflK; protease specific for phage lambda cII repressor NT01SF5194 [Shigella flexneri 2a str. 2457T]  ali follow..  13  188...........TDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFAARPPEEVKAAFDDAIAARENEQQYIREAEAYSNEVQPRANGQAQRILEEARAYKAQTIVARFAKLLPEYKAAPEITRERLYIETM 331
10 -5.390IDP93820 integrase [Yersinia enterocolitica subsp. palearctica Y11] CBY26680 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  9  1......................................................MSLNGSKIRNLKPSKVSDSHGLYLLVNPSGSRLWYLKYRINRKESRLGLGAYPDVSLADARQQRDGIRKLLVQNINPAQQRSAERTTSSPEKTF 98
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.