current user: public
If you have questions about the server, please let us know.

Query: [L] COG1039 Ribonuclease HIII, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290
# Score Template Links and tools%idFirst MNIVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQKAIKIAQLLast
1 -6.460IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124]  ali follow..  9  41..............................................................................IGSDRS-TGDALGPLI--GEKIKFLSKNNIFIYGT--EETVHAGNLKETVKIIKSKHKKPFIIA----IDACLGVVDNVGHVLILKPGIALNKDLPEVGDLSILGIVNISGSLE-----------------FMVLQNTRLYTVMLLANAISNG............................................................. 172
2 -5.650IDP04194 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2444 [Clostridium perfringens ATCC 13124]  ali follow..  11  34..............................................................................IGTDKC-IGDCLGPLVGTLLREKFFPLKVFGTL----DSPIHALNLDKKITEILKTYPGYKILA----IDACLGDSNSIGEIHAIHPGKGVGKSLRSVGDMSIIAIVDSSENID-----------------LFTSRPIRLSFILDMSKVIVDS............................................................. 164
3 -5.110IDP06181 hypothetical protein jhp0993 [Helicobacter pylori J99] NP_223710 [Helicobacter pylori J99]  ali follow..  11  66..................................................................................DLGCST--GNFFIA---LNQQIQQDIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVKFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALL-ESVGFK............................................. 224
4 -4.850IDP04133 gene: hpkA; sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1195 [Clostridium perfringens ATCC 13124]  ali follow..  9  2LLIIFILKTKEINRLTLELKKLNSEGKIEKLRLSLPNKNIENLIVEINTLI------DDKRKMENIYKEKDMELREAIANMSH----DLRTPLTSIMGYVYLLNDDKLDKEERKEYLKIIEKRSLVLNDLITNFYGLSRIQADQYEIKLEPVNLELVLGEIIAAFYETLDEPEINIEEGLGPVLGDKQALNRIFTNLIENIIKHGEGEVKISLKKKNKYIVMEFSN-LEPKDVNRIFEKFFTKDRMRTGQNTG----AIVKLLVEKQG........................ 265
5 -4.840IDP05527 putative carbon starvation [Clostridium difficile 630] CD2600 [Peptoclostridium difficile 630]  ali follow..  10  22...........................................................VEKVFGTNDKNQTPAIACRDGVD-AGLGPIFGAIVFGTIFAGGVHDFASGYLSMKKGTSASELVGLYLGNGAKIAMRIFSVILLVLVGVVFVTGPAGLLKTLTGVNAQIWVGVIILYYIMATVLPIDKLIGKIYPLFGAALLIMAVGVAGGLIIKGYNLFITIACGAITQSPLMARCVEKESE----ARPVFYGSMVAEGIIALV............................ 276
6 -4.830IDP00563 gene: hmuR; hemin receptor precursor YPO0283 [Yersinia pestis CO92]  ali follow..  11  34................................................................................TQTSSKKHSTDTMVVTATGNERSSFEAPMMVTVIEGNAPTSQTAATAADMLRQVPGLTVTGSGRTNGQDVVMRGYGKQGVL---------------------TLVDGVRQGTDTGHLNSTFLDPALVKRIEIVRGALLYGSGALGGVIAYETVDADMLQPGQNSGYRVYSSAATGDHSFGLGASAFGRTDDLDGILSFGTRDIGNI...... 221
7 -4.750IDP92657 axial filament protein, partial [Mycobacterium tuberculosis CDC1551] NP_337004 [Mycobacterium tuberculosis CDC1551]  ali follow..  14  93...................................................................EQALKPGDYVVVQVSKDPVGH--GARLTTQVSLAGRFLVYVSSTGI--SRKLPDTERQRLKEILREVVPSDAGVI-RADVARLRERWEQIEAKAQETKEKLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLT-KYESADGPDGQSAPDVFTVHRIDEQLAKAMDR-KVWLPSGGTLVIDRTEAMTVTGAGGNLEQTVTKNNLEAAEEIVRQLRL 349
8 -4.570IDP02549 RNA methyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA0547 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  2...........................................................................GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQ---------HVKITYYDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFV---RETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLE................................................. 159
9 -4.560IDP90611 gene: tmk; thymidylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2016 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  10...............................................................................GLEGAGKSTAIQVVV-----------ETLQQNGIDHITRTREPGGTLLAEKLRA------LVKEEHPGEELQDITELL--LVYAARVQLVENVIKPALARGEWVVGDRHDMSS------------------QAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDIS-FFERARERYLELANSDDSVVM 184
10 -4.430IDP01039 gene: cysN; sulfate adenylyltransferase subunit 1 STM2934 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  32.............................................................................TCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI--DVAYRYFSTERRKFIIADTPGHEQYTRNMATASTCDLAILLIDA---DQTRRHSFISTLLGIKHLVVAINKMDLVD---------REETFARIREDYL-----TFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLE. 233
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.