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Query: [C] COG1151 6Fe-6S prismane cluster-containing protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETISEKSEGRVSYHDSVEEMVKKIREDGMSNVFDRYALQEKIRCKFCLEGLSCQLCSNGPCRISEKTGQEKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAYRTLKATAEGRTPFKITDENKLKWMCEKLGIDTAQSINDMAFELAVILEDQQRIGVEDQNVMVEAFAPKKRIEAWKKLGIYPAGTVHEEQNCVASCLTNVDGSHISLAMKALRLGIATIYNTQIGLEMVQDILFGTPTPHEVNMDLGIMDPEYVNIVFNGHQPWIGAATILKAKTPEIQDMAKQAGAKGLRVVGSIETGQELLQRFPVDEVFVGHMGNWLAIEPLLATGTVDIFAMEENCSPPAIDMYAEKYQVTLAAVSTIIDLPGVNYKFPYDPAQADETAQRLIELGIENFKKRKERQIKPHVPQKIQKAIAGFSTEAVLGALGNKLDPLVDVIAKGQIKGVVALANCSTLRNGPQDWVTINLTKELIKRDILVVSGGCGNHALEVAGLCTLDAANNIAGNGLKAVCNALKIPPVLSFGTCTDTGRISMLVTALAEHLNVDVPQLPIAVTAPEWMEQKATIDGIFALAYGAYTHLSPTPFMTGARQLVDLLTNKAEDVTGGKIALGDDPMKVANDIEDHIMRKRKELGLSLast
1 -6.500IDP01203 glycosyltransferase, MGT family BA_2083 [Bacillus anthracis str. Ames]  ali follow..  1.........................................................................................................................................................................................................................................MANVLVINFPGEGHINPTLAIISE----LIRRGET-------VVSYCIEDYRKKIEATGAE-FREFENFLSQINIMERVNEGGSPLTMLSHMIEASERIVTQIYDYLLYDNHFPVGRI--IANVLQLPSISSCTTFAFNQYITFNDEQESRQVDETNPLYQSCLAGMEKWNRQ-----MKCNSMYDIMNHPGDITIVYTSKEYQPRSDVFDES-----YKFVGPSIATRKEVGSFPMEDLKG---EKLIFISMG------------TVFNEQPELYEKCFEAFKGVEATVILAVGKKINISQFENI-LEVLQHADVFVTHVPLV-VIPVTGDQPLVAKRVNEVGAGIRLNRKELTSELLRETVKEVMYDV--RKVGESLRNAGGYKRAVDEIFKMKMNSYLKL... 401
2 -6.390IDP90990 gene: nrdE; ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM 10] y1223 [Yersinia pestis KIM10+]  ali follow..  14.............................................................................SELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDYLIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFL-------GAFKYYTSYTLKTFDGKRYLERYEDR----------VCMVALTLATGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIED---MESIGRSIN--SALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQL--GAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDI-------------EQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANPIKGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGS-------LNIAQVMDSPDFGKSIEIAIRGLTAVSE--SVPSIEKGNQESHAIGLGQ----MNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASG.. 533
3 -6.340IDP01784 gene: ttrA; tetrathionate reductase complex subunit A [Salmonella typhimurium LT2] STM1383 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  77.....................................................QCFGCW--------------TQCGIRARVNADGKVIR--IAGNPYHPLSQEHPIDSSVPARGATLLESLYSPLRLLEPMKRVGISFEQLIEEVVEGGDLFGEGHVDGLRAIHAPDTPIDAKHPSFGPKTNQLLVTNTSDEGRDAFLRRFALNSFGSK-NFGAHGAYCGLAYRAGSGALMGDLDKNPHVKPDWENVEF-----------ALFMGTSPAQSGN----PFKRQARQLASARLRENFQYVVVAPALPLSTVLADPRGRWQPV-GS----DSALAMGMIRWIMDNQ-----NADYLAIPGVQAMQQAGEQSWTNATHLVIADELPTLAGQHLTLRHLTPDGEETPVVLNTDGELVDASTCRQARLFVTQYVTLADGGLQRLKEAAEKLSLAQYSEQCGVPEAQ-------IIALAETFTSHGRKAAVISHGGMMAGN------GFYNAWSVMMLNALIGNLSLS-----GG.............................................................................................................. 533
4 -6.060IDP04033 biotin sulfoxide reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC1950 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  36..................................................RGKGVLTAGRM--------------GPLL---CEVQDGKMVATKNALAQTVPNSLQS---------TGPDQVYTQARVKYPMVRKGFLANPAAPKGVRGSDEFVRVSWDDAYRLIHEQHMRIRKTYGPASVGSYGWRSSGVLHKAQTLLQRYMSMAGGYSGHLGDYSTGAAQI-----------IMPHVVGSIEVYEQQTTYPVVLEHSDVVVLWGLNPINTLKIAWSSTDCAGLEFFHQLKKSGKTIIGIDPIRSETIEFFGEQAQWIAPHPM---TDVAMMMGIAHSLIHDKAFLDKYTVGY-DRFEAYLLGKEDGVEKS-AEGICGVPAKQLETLAEIFSN--------------------HRTMLMAGWGMQRQQYGEQRHWMVVTLAAMLGQIGGFGFSYHYSNGGNPARDAGVLPAISAAIGGGSSAGNDWAISGATQSFPVARIVEALENPGGAYQHNGHTLTFPEI-DTNRLIKAWQKPELIVISEPYWTAAAKHADIVLPITTTFERNDLTMTGDYSNQHLVPVVEPQGEARNDFDVFADMAEMIRPGGRDVFTEGKTEMEWLYGFYKTAQKSGRAARVA 592
5 -5.790IDP06457 gene: I4L; I4L [Monkeypox virus Zaire-96-I-16] NP_536492 [Monkeypox virus Zaire-96-I-16]  ali follow..  11  8............................................................................GYKEMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVT-----TVELDTLAAEIAATCTTQHPDYAILAARIAISNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNLEKSYLLKINNKIVELMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD--SIEGIYDTLK--RCALISKMAGGIGLSI------------------SNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEDIMAFLDLKKNTGNEEHRTRDLALWIPDLFMKRVKDDGEWSLMCPDECPRLDNVWGDEFERLYTLYERE-RRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCT-------EIIQYADANEVAVCNLASV-------NMFVIDGRFDFLKLKDVVKVIVRNLNIDINYYPIPEAEISNKRHRPIGIGV----QGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCKLAE................... 547
6 -5.780IDP92601 ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii ME49] TGME49_094640 [Toxoplasma gondii ME49]  ali follow..  10  67............................................................................GEEESFDQILKRIEKLSFGLHPLVD-PARVAQAVINGMYAGIR-----TSELDDLAAQTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQLHGYVDKLGREAKLVSTEVYEFVRENEQALNEALNYSRD-LMRVACGIHCGDVEKAIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQED--SIDGIFSTLK--QCALISKTAGGLGLAV------------------TDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEDVFDFLDIKKNHGKEERRARDLALWIPDLFMERVNDNAGWTLMCPNECPGLTEVWGDEFKELYERYERE-GRGRKTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSK--DEVAVCNLASVSLPKF--------VDRESRTFDYEHLKRIVKVMTRNLNIDRNYYPVPEAKKSNLRHRPVGLGV----QGLADAFMLLRYPFDSPEARVLNRNIFECIYFAALEASCELAA................... 606
7 -5.660IDP00459 gene: cysI; sulfite reductase [NADPH] hemoprotein beta-component YPO3371 [Yersinia pestis CO92]  ali follow..  83..............................................................................................................................RCRLPGGIITPQQWLGIDKFAADNTLYGSIRITNRQTFQFHGILKGNVKPAHQLLNELGLDALATANDVNRNVLCTSNPVESLHQEAYEWAKKISEHLLPRTRAYAEIWLDAEKVATTDEEPILGATYLPRK--KTTVVIPP---QNDVDLHANDLNFVAVADKGKLIGFNVLVGGGLSIA-----------HGDKNTYPRKASEFGYIPLKHTLAIAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVEKRAGVSFSAIKPYQFIGRGDRIGWVKGVDKKWHLTLFVENGRLLDYPGRSLKTGVAEIAKIHQGDFR--LIVAGVPEKDKARIEALAREHLMDDNVTSQRENSMACVSFPTCPLAMAEAERFLPEFVTRVEGILQQHGLAD-LRVTGCPNGCG------------RALLAEVGLVGKAVGRYN---LHLGGNREGTRIPRMYRENITADEILLITDQLVGRWAKE--GDFVIRAGVIAPVIDSARDFYDVQEAM... 576
8 -5.610IDP95104 putative glycosyl transferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920355 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  12..................................................................................................................................................................................................................................................PELTGIGKYSGEMVKW---FVENGLDVRVITAPPYYPAADNYSGWKYAKEKFPEVVYRCPLYVPNKPSTIKRLLHLSSFAFSSLFPLLMQARWKPDYVICIVPTLFCVPGALIQDFEVDAMLGLGMAKKGVFAKFAKKFEKWCLTSADKVSTISKTMLLNASGKGVP---RKNLIFFPNWSELERFKNVKSDQSVMLKEEFGIADDRKVILYSGNIGEKQGLE--IVIAAAQKLAMKNYVFLFVGQGGGK-----------------ENLKKMSSDLNLDNVIFKPLQPYD--------LLPALLN--LADCHLVVQKKGAADAVLPSKLTNILAVGGNSVITAEENTELGQLCKN-------NPGIAQCVEPESVDALISGIEQCLLMPRQN.... 378
9 -5.580IDP00535 gene: dacB; D-alanyl-D-alanine carboxypeptidase/endopeptidase YPO3506 [Yersinia pestis CO92]  ali follow..  33...............................................................................................................................................................................................QYLPDGANLALMVQKIGASTPAIDYHAQQMALPASTQKVLTALAALLQLGPDFRFNTTLESHGTITDGVNLIARFGDPTLTR--------QQLRNMVATLRKAGVKIAGDVVIDTSVFASHDKAP------GWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSAPNPGDTAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVVPGELNRFTLTGCLTQRSEPLPLAFAVQNGASYAGAILKDELKKADIQI-DGNLRRQTIPSPAGNVLAQTQSAPLHDLLKIMLKKDTVFRTIGHQRFGVP----GTWRSGADAVRQILRQKAGVDLGNSIVVDGSGLSRHNLIS-PATMMQVLQYIISMLPLAGYVNGKVSAKTGALQ------GVYNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRAPLVRFESRLYKDIYQNN...... 482
10 -5.540IDP90664 gene: nrdA; ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0024 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  8............................................................................GRTEDVSKIKKCTSDAVKDLE--GVNLSELELDAKIQFRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMLLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQN--AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDN---IEGIFDSYQ--EMALLSKFGGGIGWDW------------------SKVRAMGGSIDGHKNAAGGIIPFLKI-TNDIAVAVDQLGTRKGAIAVYIEDISDFIDLRKNSGEERRRAHELALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASI-NLSKVYTKEDIERVVPTAIRMLDIDLNFYPHRKVKDTNLKSRAIGLGV----MGEAQMLAEAKIHWGSDEHLNKI------------------DEIMEQISFEAINASSNLA.. 593

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.