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Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLILast
1 -7.100IDP95182 hypothetical protein KPN_03558 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001337220 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  13  76...........................................................QGKVLLTGQSPTPDLSARAKQIAMGVEG------------TTEVFNEVRQGQPIGLGTAS-----SDTWITTKVRSQLLSTDQVKSSNVKV-ENSEVFLMGLVTDREGRAAAD-VSRVTTAFSYI 190
2 -6.670IDP01746 hypothetical protein YPO3528 [Yersinia pestis CO92] YPO3528 [Yersinia pestis CO92]  ali follow..  14  60...........................................................PGKTRVI--AGRTSAKEMNAPLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFSIESSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLPQGNVVKDGALTSAEVQQVIDQLHQLVQQ.... 187
3 -5.830IDP00467 N-formimino-L-glutamate deiminase YPO1974 [Yersinia pestis CO92]  ali follow..  9  278......................ELVMLANSQAVAGLCPTTEANLGVDYIHHQGRWGIGSDSHVSLQRLRDQRRNRLTCERQPAVADLLYSQALAGGRQACGRQISQLAVGYRADWLVLDGDDPYIAGTRSASLLNRWLFAGGKSQIR-DVYVAGKAVIVDRYLQQQTAQAFLAVLKACQQ.... 454
4 -5.710IDP01949 gene: yoaB; putative translation initiation inhibitor [Salmonella typhimurium LT2] STM1822 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  21....................................................................................................................................................TLWYTGVPENLDADAFEQTANTLAQIDAVLEKQG.. 54
5 -5.690IDP91412 transcriptional regulator [Vibrio vulnificus CMCP6] VV1_0715 [Vibrio vulnificus CMCP6]  ali follow..  13  58...........................................................LGKVRVI--AGRSSSKEMNAPLMQAITAAQFSADHYQTTTIINQDDAIWGTGSF-AQDSKKEFPWSSMVLDENGVVASSWQLDKESSAIIVQKQGKVLFVGALSSDDITQVLELIKANI...... 183
6 -5.370IDP04050 gene: hpaF; 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Yersinia pestis CO92] YPO1765 [Yersinia pestis CO92]  ali follow..  10  6...........AECTDNIREQAELPVLFSNVNQTLVNTGLFPLAGIRSRAIWLDTWQMADGTLKIGYGRSIEHRQAVGKTLFALIQA-----------HFAALMSQRYLALSFVIEELDPTLSFKQNNAHT..................................................... 123
7 -5.320IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92]  ali follow..  9  273......................DVQAMANAGTVAVLLPGAYYLLRETQCPPIDLFR--QYKVPMALASDANPGTSPVLSLRLMLMACTLFRMTPEEALAGVTCHAAQALGVQQTQGTLETGKLANWVHWPLSHPAELAYWLGGQLPA-TVVFRGEV............................ 404
8 -5.200IDP90213 gene: m029L; m029L, m29L MYXV_gp033 [Myxoma virus (strain Lausanne)]  ali follow..  14  47..................................................................................................................LNEYCQITFREWSINVTRAGQ------HSPTFTAVVTVSGYSF-TGSNKKEARKNAAKEAMDVILK.... 109
9 -4.870IDP90288 profilin family protein [Toxoplasma gondii ME49] TGME49_093690 [Toxoplasma gondii ME49]  ali follow..  12  2.................................SDWDPVVKEWLVDTGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHDTIGEDGNACGKVSINEASTIKAAVD-GVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIEKEQDKGNSRTSALAFAEYLHQSGY. 163
10 -4.820IDP04067 thioredoxin [Bacillus anthracis str. Sterne] BAS4417 [Bacillus anthracis str. Sterne]  ali follow..  24  39..................................................................................................................LEEIDAELGEK-VKVDVDENQETARQFEVMSIALFVLKDGKVVALGYKPKEALVELVSKHF......... 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.