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Query: [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVETPEVFNLIVRWRSLNDHTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHGKSGAALast
1 -43.200IDP00080 gene: yneC; putative inner membrane protein NT01ST5073 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  14MHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDEQA-VAFHKTTPHYKTCVEQLEPLMTGPRTKKVFMGLMP............. 109
2 -42.300IDP93953 hypothetical protein YE0340 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004718 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  13  8ERHIICELRCEPENRERVKELVLKFVEPARLETGCLYYDLYQKIDEPDTFYIIDGWVNQEA-VTSHAENPHVAEVMSDLQPLLTFGPSISLITRVS.............. 102
3 -38.000IDP90999 hypothetical protein y1744 [Yersinia pestis KIM 10] y1744 [Yersinia pestis KIM10+]  ali follow..  17  3.IRVIASIVAKTEFIEEVKAALHQIIEPSREEKGNLQYDLHTESEQKGSFVFFERWASDEA-LEKHNKTEHFKQLVKAIDGKLES-LEIKKVKQIA.............. 95
4 -34.100IDP02222 heme-degrading monooxygenase IsdG [Listeria monocytogenes EGD-e] lmo0484 [Listeria monocytogenes EGD-e]  ali follow..  13  1MIIVTNTIKVEKGAAEHVIRQFTGPTKDIAEVEGFLGFELWHSKPEDEEVVVTSKWESEEA-QRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVI 118
5 -6.670IDP90098 ZZZ_0014 [Escherichia coli 042]  ali follow..  13  10VFKLISSVRVFPEEYSDYDSTRKNIINTVEEVRNSEKMSLSDSELDAAFYAVIVEWRDNLLQIKYFGHSTGGVEFFYKLDKVIESGSQAGWV.................. 117
6 -5.640IDP91869 gene: aac(6`)-Ih; aac(6`)-Ih [Acinetobacter baumannii] AAC41391 [Acinetobacter baumannii]  ali follow..  11  75.VAFLEGIFVLPERRSGIATGLVQQVEIWAKQFACTEFASDAALDNQISHAMHQA---------GFHETERVVYFKKNIG.............................. 146
7 -5.510IDP05339 gene: glyS; glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1622 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  371..YKAAILPLSKKLSGEAIKIFEQLSSKDFDESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKTKF.................. 463
8 -5.400IDP91868 gene: aac(6`)-Ig; aminoglycoside 6`-N-acetyltransferase [Acinetobacter haemolyticus] AAA21889 [Acinetobacter haemolyticus]  ali follow..  9  74.VGFLEGIYVLPARRSGVATMLIRQAEVWAKQFSCTEFASDAALDNVISHAMHRS---------GFQETEKVVYFSKKID.............................. 145
9 -5.360IDP90402 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_635 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  16  45............EKTQEKIQELDKRSQEILQQTGMTREQMEVFANNPDNFS--EEWRALENIRSSCNEY......................................... 100
10 -5.220IDP95438 set236a-040 [Undefined organism]  ali follow..  9  73.IGYLEGIFVLEKRRRGIGKVLLTACEEWAKEQGCEEFASDTELDNAEGLSFHSG---------GFYEANRIVCFVKNL............................... 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.