current user: public
If you have questions about the server, please let us know.

Query: [R] COG2351 Transthyretin-like protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGIYELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAGAHYHVPLLVSPWSYSTYRGSLast
1 -9.060IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  12  734GYAFEAKKVDALDKNVLSGAKFNLEDAFGN--IVVKDLVSDEDGIIQ------SVKNPGTYYLV----------EIMAPRGYEKLKDKIKVEIGNKD.................... 813
2 -8.980IDP05077 hypothetical protein lmo1115 [Listeria monocytogenes EGD-e] lmo1115 [Listeria monocytogenes EGD-e]  ali follow..  22  741.GTAELTKKDVSTGELLPNTGIRILDEEKN---TIAEGRTDDKGIYT------EKLPAGKYYF----------QEYDAPTGYQLDDTPMLFEITENGEVVKCEM............. 825
3 -7.920IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  17  606.GSVELTKLDSATKATLAGATFELQ--DKEGNTLQTGLTTDENGVLK------TDLVPGTYQF----------VETKAPIGYELDTTPVSFEIVAGET................... 685
4 -7.770IDP05436 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2085 [Listeria monocytogenes EGD-e]  ali follow..  22  415.GSITIFKQDEANKKGLANAVFDVKSIDG---TTLKKVTTNSKGYAL------ENLQPGTYVIT-----------VTAPPGYEKSANEIRVTIPFNPQ................... 493
5 -7.270IDP05223 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0160 [Listeria monocytogenes EGD-e]  ali follow..  18  416.GSVSLEKVDRDTKSLLADAEFELQDKDGN--TLKTNLKTDQKGKLT------ADLLPGEYQFV----------ETKAPTGYILDTTPLKFKISTEALNVTVTK............. 501
6 -7.210IDP05567 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2576 [Listeria monocytogenes EGD-e]  ali follow..  16 1174TGEVILVKQDSATGETLEGAVFDLMTADGA--IVASNLTTDANGEIT------TNLAPGKYSFK-APEGYITAENTKLAPIPDAGSVKIEFSLIAENGEYRIQETKAPDGYQL.... 1338
7 -7.110IDP06545 gene: fms18; LPXTG family cell surface protein Fms18 [Enterococcus faecium DO] AFK59452 [Enterococcus faecium DO]  ali follow..  18  279.GSLKIKKVDKETGNVVPGTVFHLDFGKT---LPAKDVTTDKEGIAT-----DEIPHGAKVTI----------TEKSVPAPYTIDTTPITATIKSGET................... 358
8 -7.070IDP05036 hypothetical protein BA_1663 [Bacillus anthracis str. Ames] BA_1663 [Bacillus anthracis str. Ames]  ali follow..  18  220..RVRVKATDVESAVKEVHVTLK----KENKEITFLLDYNKRDMDWQKVFEITDALPSGTYELLVEVVD................................................ 283
9 -6.930IDP01769 putative inner membrane lipoprotein [Salmonella typhimurium LT2] STM2532 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  293.NRLDIFTQSLENGAAQSGIEIVLLNDKG---QTLAQATSDAQGHVAALLLARKEEQTTLLDLTLPALDLSEFNVAGAPGYSKQFFMFGPRDLYRPGETVILNGLL........... 401
10 -6.890IDP05697 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2178 [Listeria monocytogenes EGD-e]  ali follow..  18 1373.GSVVLTKTDGETKALLANATFKLVDEDN---NVTENLTTDASGKLE------TNLAPGDYQLI----------ETKAPAGYELDTVPVDVKITFDQK................... 1451
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;