current user: public

If you have questions about the server, please let us know.

Query: [S] COG2833 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .
# Score Template Links and tools%idFirst MTDKPTYEQTLRGNAIRAISACDLDEKVRLARETASRWFARALSVRSPLDPPLPERPGRPEKPELVPPRMLKKRSLNTEHGRIALMHALAHIELNAIDLALDIVARFAVKPIPRSFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDGLWQSAHQTRNDLEARLAVVPLILEARGLDVTPSLLEKMIETGDHETAAILNIIYNDEKTHVAVGAKWFRFFCARNRIDPAARFRELVRANFRGELKPPFNELARAEAGLTPSFYRSLSPVSILast
1 -18.800IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  20...............................QNIAQFWTEEEIAVSSDK-------------------NTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL---QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQG-TASGEIINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMATEEIYTSIGLVEDVNRFVRYNA 261
2 -18.800IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali follow..  11  32.........................................................................................PDGELSAALRYLNQRYTMPTN----KAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKA-WTATYIQAKGDVVADLHEDMAAEQKARATYQWLINL---TDDQDIKEILRFLREREIVHFQRFGEALMDVQDKMKCKK........................................... 188
3 -18.500IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  12  58...............................DGCANHWMPQEVNMNHDIA----------------LWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNP---ECRQYILRQAFEEAIHTHAYQYCIESLGMDEGEV-SDPTFHTGTPENDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRN-NGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWTAEFQQEVIQMILEGTMLEIE--PRGVLGMNASMMEEYLKFIC 310
4 -18.400IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali follow..  10  29...............................RLTSNFWLPEKVPLSNDI-------------------PSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP---HEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKNDDPLKKKIASVFLESFLFYSGFYLPMYWSSRA-TNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYDNEVRTEDLYDHVGWTEDVKKFLHYNA 262
5 -17.500IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali follow..  24...............................KLTEQFWLDTRIPLSNDL-------------------DDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTP---HEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKNGSPLEKKVASVFLETFLFYSGFFTPLYYLGNN-ANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGTESLYDGVGWTEEVKTFLRYNA 257
6 -13.700IDP00977 gene: ftnB; ferritin-like protein STM1932 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  3..............................................................................AVGMVQKLNTPMNLEFYASNLYLHLSEWCSEHSLT-GTATFLRTQAQGNVTQMMRMFNFMKNAGATPIVKAIDV-------GEELCSLEELFQKTLEDYQQRASTLSRLADEAKALNDASTLDFLHTLEKEQQQDGVLLQTILEEV................................................... 141
7 -13.600IDP02347 gene: ftnA; ferritin [Yersinia pestis CO92] YPO1783 [Yersinia pestis CO92]  ali follow..  12  3..............................................................................KKEMAQKLNEQLNLEFYSANLYLQMSAWCSDKGFE-GAAAFLKKHSQEEMQHMERLFEYLSGTGSMPVLGTITA-------PVDFASLADVFKLTYEHEQLITTQINELAHVAMTTHDYSTFNFLQWYVAEQHEEEKLFKSILDKL................................................... 141
8 -13.200IDP01129 ferritin BA_5296 [Bacillus anthracis str. Ames]  ali follow..  12  3..............................................................................SKKLHDALNDQMNFEFYSAHAYMAMAAYCTAESYD-GFANFFLVQAEEERFHAMKLYNYINDRGERAIITGFDN-------NNEYESVLNAFEVALEHEREVTKRIYNLSDIAWDEREHATITFLKWFVDEQVEEEASFDSIIQKL................................................... 141
9 -13.200IDP01358 ferritin VC0078 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  9..............................................................................SQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFD-GAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAA-------RHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKL................................................... 147
10 -12.800IDP00611 ferritins family protein SACOL1952 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  3..............................................................................SKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYE-GFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSA-------KIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYL................................................... 141

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.