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Query: [S] COG3111 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNPLast
1 -13.400IDP05234 gene: aspS; aspartyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1519 [Listeria monocytogenes EGD-e]  ali follow..  20  7...............................................YCGELNEAHIGQSVVLHGWVQKRRDLGGLIFRDREGIVQVVFNPEFSKEDSVRNEFVVTIKGTVKLATGKVEVLAEEITILNT 107
2 -13.100IDP05303 gene: aspS; aspartyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  24  7...............................................YCGLVTEAFLGQEITLKGWVNNRRDLGGLIFRDREGIVQVVFNPAFSEEETVRSEYVVEVQGTVKIKTGQVEVQVTNIKVINK 107
3 -13.000IDP90630 gene: aspS; aspartyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0640c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  5...............................................YNTDLGISHVGQSVKLCGWVNSYRDHGGVIFRDRSGIIQLVCDPNDSKESNARNEFVLITEGTIKLKTGEIEVVVSKLTIENE 105
4 -12.900IDP04615 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4297 [Bacillus anthracis str. Sterne]  ali follow..  15  7...............................................ACGKVTVEAVGQTVQLKGWVQKRRDLGGLIFRDRTGIVQVVFNPETSKEETIRSEYVLHVEGTVNMATGRIEVQATKVSVLNA 107
5 -12.700IDP90878 gene: aspS; aspartyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC1166 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  5...............................................YCGHLNKSLVGQTVELCGWVRRDLGGLIFIMRDREGIVQVVVDPDMADVNQLRSEFCIKLTGEVEMATGEVELLARSLEIINR 104
6 -12.500IDP90838 gene: aspS; aspartyl-tRNA synthetase [Yersinia pestis CO92] YPO2053 [Yersinia pestis CO92]  ali follow..  19  5...............................................YCGQLNLSHVGQSVTLCGWVRRDLGGLIFIMRDREGIVQVFFDPDHKAASELRNEFCIQITGTVDMSTGEVEIFANTLNIINR 104
7 -12.000IDP05333 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS2031 [Bacillus anthracis str. Sterne]  ali follow..  17  6............................................KRSLTKECTE-KSGKVVSLQGWVIRHLGNVSFLLRDRTGVIQCVLENEFA-GFKVDVESIVHVIGEISKTELGVEVLAHEVKILNG 95
8 -11.800IDP05569 asparaginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4454 [Bacillus anthracis str. Sterne]  ali follow..  16  2.........................................ENTLVKSLYRDTDKYAGQTVQVSGWILRDSKAFGFILNDGSFFKSVQIVFDTELDAKLPLSSSVKVEGKVPGAKQPFEIKAEKIDIEGL 101
9 -11.700IDP05239 gene: ansB; asparaginyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1896 [Listeria monocytogenes EGD-e]  ali follow..  14  3..............................................ITINQASEF-VGKEVTIGAWLANKRSSGKIAFRDGTGFMQGVVVKAEVGDKALTQETSLYVTGTITRSPFGYEMAVSSVEVISE 97
10 -11.700IDP91410 hypothetical protein VV1_0721 [Vibrio vulnificus CMCP6] VV1_0721 [Vibrio vulnificus CMCP6]  ali follow..  13  1MKRRLTLFLTLIFAAWLPVQAIAQQVTT-DSVGMPAADHSGTAAAQSKVGGVRPELNNKKVKIPGFVIDANKVTEFLLVPYFGAIYVKFPKGA---PVQELWDVIYLVGTLKTETVSHEIEGDAIEPYD. 163
11 -11.600IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  3..............................................TTIKQAKD-HLNQDVTIGAWLKRSSGKIAFLLRDGTGFMQGVVVKSEVDEKEITQESSLYVTGTINRSDLGYEMQVKSIEVISE 97
12 -11.400IDP90728 gene: asnC; asparaginyl-tRNA synthetase [Yersinia pestis CO92] YPO1412 [Yersinia pestis CO92]  ali follow..  24  2............................................SVVPVVDVLQGRAGSEVTVRGWVRTRRDSKAVAVYDGSCFDPLQAVVNNTLPLHLTTGCSVEVTGTVPGEGQSFEIQATAINVVGW 102
13 -10.900IDP90531 RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS Q9KSF9 [Vibrio cholerae]  ali follow..  20  4..............................................APVNDVLSGKLDSEVTVRGWIRTRRDSKALAIYDGSCFNPIQAVVPNNLNLKLTTGCSVEVTGKIPASGQAFELAASDVKVVGW 102
14 -10.500IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  5  5MKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKEGYIILRNETVFLADDKTFETKIELQNYIEQQMNQDYPSDIVLIFKDKDAY-----------DQLKTGDKIKVWSSQTFESYPVKMIVEKFEIAE. 122
15 -10.500IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  12  5FKKVILPVLLVVLFLAGCNQAEVPALVLDG-----------------TITDTSLLENNNELTVNGTLTWNGEKNDITVSSNT-AVTNATTGKAMKLADIKEEDTVRAPQGSNITS-PAPGKVSENAT... 120
16 -10.400IDP05430 hypothetical protein lmo1265 [Listeria monocytogenes EGD-e] lmo1265 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKNRITMIAGIVCLSILTACSSSESVKGTTSEEQTTSQSGAEMIKLKLAENMDNLEKDAPIIIKATKKSEKTTVTKETKENVFPSDVQINS---TTGKLSENMTIKV....................... 126
17 -10.400IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKTSIIFIFCTLLFVTACSTSEN-----------------QTQATEATGTIEQVETDAILINNFKEKKDKYNPEAAIRFDIVDKYYDETGNKIKITDLNKNDDVKIIFPIQETS-PAQIDPKYVQKII. 115
18 -9.840IDP05237 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1653 [Listeria monocytogenes EGD-e]  ali follow..  7  1MGIIASTISIIGIGCFLTVNTHAEKTKPEKKEVPTYAIHSDYTLDIDNPNEVVGDAD---YVFVGKVTQETGTDYKNETPIEQEYKVEVIS------ELAMDKEIVLQGIREDGSAYDVFE......... 132
19 -9.650IDP01033 gene: ccmE; cytochrome c-type biogenesis protein CcmE STM3815 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  9LWVVCAVLAGLGLTTALVLYALRANID-----------YTPGEILYGKRETQQLPAAGQRLRVGGMVMPGS---NFSLYDAEGSVTVSYEG----PDLFREGQGVVVQGTLEKG----HVLAHEVLA... 128
20 -9.650IDP00993 gene: ccmE; cytochrome c-type biogenesis protein CcmE STM2250 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  9LWVVCAVLAGLGLTTALVLYALRANID-----------YTPGEILYGKRETQQLPAAGQRLRVGGMVMPGS---NFSLYDAEGSVTVSYEG----PDLFREGQGVVVQGTLEKG----HVLAHEVLA... 128
21 -9.230IDP04576 lysyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0076 [Bacillus anthracis str. Sterne]  ali follow..  13  46...........................................SLYGEFSKEELEEKEISVSIAGRIMTKRGKGKAGFQDLHGQVQIYVRKDAVGDKTADLGDLVGIEGKVKTNVGELSVKATGFTLLTK 142
22 -9.190IDP90637 gene: lysS; lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0888 [Yersinia pestis CO92]  ali follow..  14  51...........................................AEFDSKENEELEALNIDVTVAGRMMTRRIMGKASFQDVGGRIQLYVSRDDLPEGVWDLGDILGARGKLKTKTGELSIHCSELRLLTK 148
23 -9.180IDP06319 gene: lysS; lysyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_345214 [Streptococcus pneumoniae TIGR4]  ali follow..  14  41...........................................DKYANLDKEQLHDKNETATIAGRLITKRGKGKVGFQDREGQIQIYVRKDAVGEKKADLGDFLGVEGEVRTDMGELSIKATHITHLSK 137
24 -9.170IDP90889 gene: lysS; lysyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0664 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  58...........................................KKFGEKSKEELEALNHVVSIAGRVMA-KRGPFLVIQETSGRIQAYASKEVQQEQGLDIGDIIGVQGALKSGKGDLYVNMEQFQLLTK 149
25 -9.130IDP02443 gene: lysS; lysyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo0228 [Listeria monocytogenes EGD-e]  ali follow..  10  46...........................................TKFADKSKEELEEAAIEVSVAGRIMTKRVKGKVGFQDRFHQLQIYIRKDAIGEKLADLGDIIGIKGTIRTNTGELSVKATEFTLLSK 142
26 -9.120IDP90947 gene: lysS; lysyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] SAR0518 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  14  50.................................................EELVEKEADSHVAIAGRLMTKRGKGKAGFQDLAGQIQIYVRKDQVGDKNADLGDIVGVEGVMKTNTGELSVKAKKFTLLTK 140
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.