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Query: [K] COG3432 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTYGYNIFTVIKFSDNVYKLQLIYYSMQLERRKRGTMEIMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDSELast
1 -16.300IDP02193 arsenical restistance operon repressor [Francisella tularensis subsp. tularensis SCHU S4] FTT0868c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  16.................................ETRIRILMVIYQ---HQLCLCHLAHIFKLANSTLSKHLDILRRNGFIHKRKQGRFHYFYFNSAYQQQLNWLFDILADDEIIQSDQKLVKQLIAQELE 109
2 -14.700IDP93833 DNA-binding transcriptional repressor ArsR [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007538 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  8  15.................................ETRLGIVLLLKE--MGELCVCDLCTALDESQPKISRHLAMLRESGLLLDRKQGKWVHYRLSPHIPSWAAQVQAWLSQQDDVQAIARKLTSANCSGSG 111
3 -14.300IDP00871 gene: slyA; transcriptional regulator SlyA STM1444 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  40...........................................IHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQSDRRAKRIKLTEKADALIAEMEEIELLIKLIAKLEHNIMELHSHD.. 144
4 -14.300IDP91319 transcriptional regulator [Vibrio vulnificus CMCP6] VV2_0325 [Vibrio vulnificus CMCP6]  ali follow..  14  51................................KMGEFDVVATLRRS-PYRLTPSELLGSLMLTSGAMTNRLDKLEQKGLISRQEDRRSVTVELTEHGLVTVN------KLIEEHVAIQHALLKNLSQPQK 146
5 -14.300IDP00098 gene: slyA; transcriptional regulator NT01SF2011 [Shigella flexneri 2a str. 2457T]  ali follow..  19  42...........................................IHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQSDRRAKRIKLTEKAEPLISEMEAVINKTRA-AEELEQLITLIAKLEH 137
6 -14.300IDP00827 gene: sarU; staphylococcal accessory regulator U SACOL2507 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  35..................................KELLILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFINKSRDERRIFVSVTPIQRKKIACVNELDKIIKGFNKERDY.......... 124
7 -14.300IDP00626 gene: sarT; staphylococcal accessory regulator T SACOL2506 [Staphylococcus aureus subsp. aureus COL]  ali follow..  23  39..........................................VLAYLEGKYFMRDIISYIGIDQSRIVKSVKDLSKKGYLNKCHDSRNVIIVVSVKQHNYIKNLLSEININET................. 118
8 -14.300IDP00724 gene: arsR; arsenical resistance operon repressor SACOL1822 [Staphylococcus aureus subsp. aureus COL]  ali follow..  9  17..................................SRLEILDLL---SCGELCACDLLAHFQFSQPTLSYHMKALVKTNLVTTRKIGNKHLYQLNHNIFESV............................. 80
9 -13.000IDP00642 gene: sarZ; staphylococcal accessory protein Z SACOL2384 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  43..........................................VLMAIDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTKDERNLQISLTEQGKAIKSPLAEIEREASDIINNLRNFVSKNFDYSD 146
10 -12.100IDP05513 putative transcriptional regulator [Clostridium difficile 630] CD0278 [Peptoclostridium difficile 630]  ali follow..  15  30.................................KWKLPIICMLAV--ENPIRYSSIKRKLGITNTMLAQSLKDLESTGIVHRKEIPPKVEYTLTSKGKSIVPILQQFANWGATNMQEKNTCGLSCKECRK 128
11 -11.900IDP91199 gene: yybR; putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] BSU40540 [Bacillus subtilis subsp. subtilis str. 168]  ali follow..  13  32..........................................FYHMIDGKKRFNEFRRICSITQRMLTLQLRELEADGIVHREQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLVKDQ 123
12 -11.800IDP00779 gene: sirR; iron-dependent repressor SACOL0691 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  2............................LTEEKEDYLKAILT-NNGDKNFVTNKILSQFLNIKPPSVSEMVGRLEKAGYVETKPYKG---VRLTEDGLTHTLDIIKRHRLLELF................ 83
13 -10.800IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  2...............................ELSPVFARRLYLALLVEERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRRYYQLSDWGQWVTERKKDIAASLG.................. 92
14 -10.400IDP95129 DNA-binding transcriptional repressor AllR [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918201 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  11  30.......................................ILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLEGADFVYQDSQLGW--WHI---GLGAFNIGSAYIHNRDVLSVGGPFMRRLMLMSGE 115
15 -10.200IDP01379 iron-regulated virulence regulatory protein IrgB VC0474 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  2..................................QDLSAVKAFHALCQHK-SLTAAAKALEQPKSTLSRRLAQL-EEDLGQSLLMRQGNRLTLTKAGEVFAVYSEQLLELANKSQEALQELNNQVTGELT 95
16 -10.100IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1....................................MASLIQVRDLLALRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEPD.......................................... 54
17 -9.800IDP00934 gene: modE; DNA-binding transcriptional dual regulator STM0779 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  22........................................ISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQL-LVERATGGKG---VLTRYGQRLIQLYDLLGQIQQKA................ 99
18 -9.700IDP95088 DNA-binding transcriptional activator AllS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918199 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  7  7........................................LRTFVSVAETGSFSRAAEKLYKTTATISYRIKLL-EDNTGVALFSRTTRSVLLTPAGMHLLAQAREWLGWIDSMPGELQQIND....... 88
19 -9.430IDP90992 DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10] y1333 [Yersinia pestis KIM10+]  ali follow..  13  22..........................MRLTSKGRYAVTAMLDVLHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGG--YLLGKDASAI-----AVGAVITAVDESVDATR........ 112
20 -9.380IDP90978 hypothetical protein y0549 [Yersinia pestis KIM 10] y0549 [Yersinia pestis KIM10+]  ali follow..  13  3.............................LSTKQFRHYTLALLLAS-GKPVDADDIYDKLSCSGPTLTRALKELRETYNAEIRYSKSTHSYQLTEKGTLTPKVLRHIKDAI................... 83
21 -9.380IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]  ali follow..  11  6........................................LQLFIHLCDSKNFAKTAAAMHISPSALSRQIQKL-EEETSQQLFTRDNRSVEITPAGKKLMPVALKMLNEWQQYQLQNRYSETELKGEIR 94
22 -9.320IDP02409 hypothetical protein Cj0883c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0883c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  1............................MLFTKASEYALLSLIISQKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGAKG--FVLIKEPSQY-----TIKEIVNSAE............... 82
23 -9.110IDP90977 gene: oxyR; DNA-binding transcriptional regulator OxyR [Yersinia pestis KIM 10] y0320 [Yersinia pestis KIM10+]  ali follow..  11  6........................................LEYLVALAEFRHFRRAADSCHVSQPTLSGQIRKL-EDELGIMLLERTSRKVLFTQAGLLLVEQAKTVLREVKVLKEMASLQGESMSGPLH 94
24 -9.040IDP93837 gene: tcaR1; putative lysR-family transcriptional regulator [Yersinia enterocolitica W22703] CAI77370 [Yersinia enterocolitica W22703]  ali follow..  7  2..................................ERLKRMSVFAKVVECG-SFTGAARQLAMSVSSISQTVSKL-ESELNVKLLNRSTRRIGLTEAGRIYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLR 95
25 -9.040IDP93880 LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004721 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  3.................................HTDFNHLAVFITVAREK-SFTRAAAHLGVSQSAISHSIRGL-EERLGIRLLTRTTRGAVPTEAGERLLANLTPYYDGIETELATLGELREKPGGTIR 97
26 -9.040IDP04639 gene: oxyR; oxidative stress transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] FTT0556c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  6........................................LEYIISVYETKSFITASEKCFVSQPALSMQIKKF-EEYIGIQIFERGTKQVLITKSGMKIVNQAYKILDEVNNLKKIAELLLENGKISIT 94
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.