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Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -56.400IDP05119 ABC transporter, substrate-binding protein [Clostridium difficile 630] CD2989 [Peptoclostridium difficile 630]  ali follow..  10  2........................................KLKKLLIGITILTLATASLAGCAKKNNGEKLSEINLTYVKSPLNPSIIQKQDDLFGKENIKVNFHEITTGPEQTQALAAGEIDFLALGGTSALIAASNGVELKILNMILTNNNSIKSAADLVGKKVAGPKGTILHQVLISALDKEGLSMDDVNMGIPEASAALSDGSVDAALIAGPAALKAMGSKLVANGEGLVDGIIVTAVSTDFAEHPEIVERFMKVEKETVNNNFDEAMEKVAKEVDLSLEETKELYAWYDFSLDITDKDISSLEDTQDFLIKNKLQEKKVN.. 310
2 -55.100IDP05042 putative sulfonate ABC transporter, sulfonate-binding protein [Bacillus anthracis str. Ames] BA_2921 [Bacillus anthracis str. Ames]  ali follow..  12  8..............................................LSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLS-PLLLAQKKGWFEEEGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGFTEIGILVQKDSKITSIKELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVQLQPDEAQPAFESGSVDAWAIWDPFISLHTGAKVITDGERLNVSSPEFLIARTKFEHPELVEKFLKVYEKAQDENLDEAIKIYTSAKKIDAEIVKEVFNHDKPLVPVTKEIVAEQQQTADFQYKLGSIKKEIK.. 311
3 -53.400IDP91135 hypothetical protein SAOUHSC_00137 [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00137 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  15  3.......................................RLSIIVIIGIFIITGCDWQRTSKERSKNAQNQQVIKIGYLPITHSANLMMTKKSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMDDYHFGIPHYSTHYLLLEELRKQLKIKPGHFEMSPAEMPAALSEHRITGYSVAEPFGALGEGKTLKHGDDVIPDAYCCVLVLRGELQHKDVAQAFVQDYKKSGFNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYDLTIKPSGYQEITTLVK-LFNPPAYDDFVE.. 314
4 -50.500IDP05207 putative sulfonate ABC transporter,solute-binding lipoprotein [Clostridium difficile 630] CD2365 [Peptoclostridium difficile 630]  ali follow..  10  2................................KLSKKIQALILFGVMGTSILTGCSSKPKEKEEAKTGKDDYTITVGYYNCDHMAGPVAESAGIYKDLGLNVKTV---GNGKVPEAMAAGKMDAGYIGTKGLVGAIPKGSPITIAANNHTGGKDIKEPKDLIGKKIATDMSDFLWTSDYGPETGLPTDPSKYMDSDKDKYLALKTGKIQAFTSCDPWGSVAENDGAYKEKANGKEYNCCSFSLNKNFEHPDLAKKLVLAHTKAIYTNPAEAAKIFAKYYNVEEEVALRTIYKKTVGEGRTLTTGEEYKNNLQMYKDLKALDDIPK.. 319
5 -46.600IDP05622 ABC transporter, substrate-binding lipoprotein [Clostridium difficile 630] CD0999 [Peptoclostridium difficile 630]  ali follow..  12  1..................................MKKYISIILLVVLTMVVLVGCSPGK-DNPKNKELSVVKQVKVAVPDGLPAVIAKLANENPEIKEGYETVYSIEKTPEAISTRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSENIKDYSDLVGKEVGCTKGLTPDITIKSLLLQKDINYSDIKFSASELVPLLATGKVKTGIVPEPALSALMSKN--EVSGSKDGYPQSTLIVKSEFDNKDFVDSFVGQLSNSIDKNPEELGAYSEKIKSTESKIIGKSLERANLKYIPVKDMIKDYKNYYEKLANFD......... 313
6 -44.400IDP05024 ABC transporter, substrate-binding protein, putative [Bacillus anthracis str. Sterne] BAS4675 [Bacillus anthracis str. Sterne]  ali follow..  13  1.................................................MLLAVFTFAACSSKKEGTKEQTQNIRIGEVTHSYAPLYVGIEKGFFKDEGLNVDLQTTAGGDKTMTALLSGGIDIALVGSETSIYVHQQGAKDPIINLVSRKKLDSFNWNDVKGVTFLGQRGGMPQMVGEYVLKKNGIDNLIQNIEFANIANAYASGTGEFVQLFEPTASIFEKEGVASFGNESGTVPYTSFMAKESFKDKAAAEKFTRALYKAQQWVDTHSPEEIADAVDTSKDITEKVIERYKKQHSYATNDAEEWKQLQTIMKEAGELQKEVP.. 309
7 -31.800IDP91987 ABC transporter substrate-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008765 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  15..............................................LVAVVLVACGQGTASKDNKEAELKKVDFILDWTPNTNHTLYVAKEKGYFKEAGVDVDLKL-PPEESSSDLVINGKAPFAVYFQDYMAKKLEKGAGITAVAAISRKSDNVSSPKDLVGKKYGTWNDPTELAMLKTLVESQGGDFEKVEKVPSNSITPIANGVFDTAWIYDGILAKSQGVDANFMY----DYYSPVIIANNDYDNKEEARKVIQAIKKGYQEHPEEAADILIKNLKEKRDFVIESQKYLSKEYASDKEKWARWNAFYKWDKENGILKEDLT.. 325
8 -31.400IDP05357 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_0382 [Bacillus anthracis str. Ames]  ali follow..  10  1.....................................MKKGLKVMLAALLAVGVAGCNPAKKEESASKDQKVKVVLDWFPNTNHTLYVAQAKDYYKKQGLDVEIIQPGDNVTAEQMIASGKADFAISAQENVTLARVEGIPVVSVGAISLKKDNMTSPKDFEGKRYGGWGGPAEEATLKTIMDKHQADFNKVEKIILGQFFKSIGRDADFEWIYDGIEAKRQGKELKDLDPALDFYSPVMITSEKHTKDKDFVKKFMSATTEGYNKEPKEAADILIKAVDVNKDLVQESQKWLSTKYQDDAKAWEVWTNYMNFLYDNKVIKKKID.. 318
9 -30.200IDP05631 ABC transporter, substrate-binding protein [Clostridium difficile 630] CD1979 [Peptoclostridium difficile 630]  ali follow..  10  2...............................NFKKLGILGLVSVFTLATITGCSSNNNKDKNNDKDTSSKKVTMVLDWTPNTNHTLFVALDKGYYKEEGLDVEIVQ-PPESGAETLVATGKADFGISYQEQVTYAKTSEDPLPIKAVASPKEKNITTAKDFEGKTYGGWGSPSEEAVFKAVMKKNRADFNKLIVNTGQDDFFAAMKTVDFAWIFDAVKADLIGYDLVKDLDERLDYYTPLIISNETVDNPELAKKFLKATTKGYEKNPEESAKILVKHAEVDEKLALKSQEYLASKYKDDAPRWSVWNNYTSFLKEYKLIDKDMK.. 325
10 -19.200IDP05398 putative phosphonate ABC transporter, phosphonate-binding protein [Bacillus anthracis str. Ames] BA_3750 [Bacillus anthracis str. Ames]  ali follow..  10  3................................KKFFAMSTTVVLAAGLLSGCGTKESSANKNADTKKGYVPKTLNVQFVPSQNADTLEAKAKPLEDKLNIPVKVSISTNYNTIVEAMASKQVDVGFLPPTAYVLAHEKKAANVILQFVVKKDSNINSVKDLKGKKIGYVTSSAGYVWPAAVLLKEGVDPLKDVKGHDQSLIALLNGDVDAAVVFQDARNIVKKDKIVKFTEKIPNDT---ISVRSDL-DEEWSKKLQDAFIEIGKN--EEGHKIIKEVYSHE-DIVREYGKKVK................................. 310
11 -18.300IDP91891 putative glutamine-binding protein precursor [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007700 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  1..............................................MISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYTDLAKMVADELKVKIRYVPVTAQ-TRGPLLDNEQVDMDIATFT---ITDERKKLYNFSGFLVNKSAKIKKIEDLNSKTIGVAQGSITQCLITELGKKKGLTFKFVLGSYPELITSLHAHRIDAFSVDRSILSGYTSKRTELLDDSFKPSDYGIVTKKSNTELNDYLDNLVTKWSK................................................................. 233
12 -17.800IDP01405 gene: metQ; lipoprotein YaeC VC0905 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  1.........................................MKFSLKSLLTIAAAASTLILAGCGEKAVDNNKVKIGVMAGAEAQVAEVAAKVAKEKYNLDVELVTFTDYVTPNAALDDGSIDANAFQHKPYLDKQIADRGYKLAIVGNT-SKQIKSVDELDGARIAVPNDPTNLGRSLLLLQQQGLTVRDIVENPKKLQLPRSLDDVALSIINTTYASSITPEKDGIFVENKESPYVNILVAREANVNAENVQNFKKAYQT------DEVAKAASEIFQ............................................... 262
13 -17.200IDP02622 ABC transporter, periplasmic substrate-binding protein [Coxiella burnetii RSA 493] CBU_0109 [Coxiella burnetii RSA 493]  ali follow..  12  5................................................LMRLLISGVMLVGLTACHQKEAKNEVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKT-SKKITALTQLTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIASNDVDLAAINTNYAIPASPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSALHS------PAVLSAAKKIFG............................................... 259
14 -17.100IDP05634 amino-acid ABC transporter,substrate-binding protein [Clostridium difficile 630] CD2174 [Peptoclostridium difficile 630]  ali follow..  13  1..................................MRRRDMIKRNIIKCLVAVLSLTFVITGCSKKEEVKNEKVITVAYVDNGEHKGFVDMWKEIGKRSGYKIKMEPTG--SSIFGMLDSGKVDVAANFFGEKYDASIPYGSDSVCIAVKDGNNEINKLEDLKGKVVAVSEGSQGQQVATSVNKDNLFQ-EKVYGDGTSGLQDLDLGRVSAWIDAELTIVGDAKKA-VRVLDKKLSATNIAYFFKKNDDKSKTIKEDVNKAIEEMLAD-GTVKKISEKWFGMD............................................. 263
15 -16.800IDP91961 ABC transporter substrate-binding protein - amino acid transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005438 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  1..................................MKKIVKYSSLAALGLVAAGVLAACSGGAKKEGEAASKKEIIVAT--NGSPRPFIYEENG--ELTGYEIEVVR-TEWSGVFAGLDADRYNMAVNNLSEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGKSTEVVQATTSAKQLEAYNAEHTDNPTILKADFQQIMVRLSDGQFDYKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLA---QGQDELKSFVDKRIKELYKD-GTLEKLSKQFFGDTYLPAEADIK.................................... 276
16 -16.600IDP05547 putative lipoprotein [Listeria monocytogenes EGD-e] lmo0285 [Listeria monocytogenes EGD-e]  ali follow..  10  10..............................................ILLASSLVLGLAACGGGSDDKALSTEKITIGTTAGP-HQQIAEEVQKLAKKDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDKGYKLDVAFKT-SNDIKDLKNLKGDKIAVPNDPSNEYRGLKLFEDAGVIKLKDGVEEKATKKDIAENEVAAAAINTNFAMGAINKDAIYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHS------DEVKAFIEKEFN............................................... 266
17 -16.500IDP91970 lipoprotein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005433 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  1......................................MKIKKWLGLVALATVAGLALAACGNSEKKADNATTIKIATVNRSGSEKRWDKIQELVKKDGITLEFTEFTDYSQPNKATADGEVDLNAFQHYNFLNNWNKENGKDLVAIADT-ANKYTKVEDIANGEIAVPNDATNESRALYLLQSAGLIKLDVSGTALATVANIKENSVDAAVVNNTFVTEAYKKALFKEQADENSKQWYNIIVAKKDWETSPKADAIKKVIAAYHT--DDVKKVIEESSD............................................... 277
18 -16.300IDP05563 hypothetical protein lmo2417 [Listeria monocytogenes EGD-e] lmo2417 [Listeria monocytogenes EGD-e]  ali follow..  14  1......................................MKKVLGLIFTLSLVLVLTACGGSSDKASSSKDDKQLVVGASNTP-HAQILEQAKPILKDKGIDLKIVKYTDYVMPNKALEEGDLDANYFQHKPYLELEEKEKGYKFADVGAI-SKKVKDIKDLDGAQVLLSNSKSDWPRVIGIFVDNGLTFDDIKDNPKNLMTAYNNEEGDVVAINSNFVVDQNPSKDAIAIESKDSPYANIVVTTEKKKDDKNITELVKVLHS------KEIQDYITKEWD............................................... 268
19 -16.300IDP05714 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_0175 [Bacillus anthracis str. Ames]  ali follow..  10  1..................................MKKVLLSIVSGAVLLLGACSAGS-----DKEVKALDEKKITVGVTGGP-HEQIFEKVKEVAAKDGLEIDVKVFNDYVAPNVSLDEKSLDVNSYQTKSYLDVFKAERNMKLTEVFST-SKSLKDVKDLDGDAIAVPNDPTNELRALKLFEKAGVTAKDVIENPKNLQLPTQLSEVKAAAINTNFALGASPAKDSIFREGKDSPYVNWVVVRTENKDDAVVNKLKKAY------QSKEVKEFIEKKFD............................................... 263
20 -16.100IDP05245 hypothetical protein lmo2349 [Listeria monocytogenes EGD-e] lmo2349 [Listeria monocytogenes EGD-e]  ali follow..  1..................................MKKKYGILALALTAALTLSACGGKE---EPEAANQKVQTITVGTGTQFPNVCFLDENGKL---TGYDVELVK-MDFSNLLVSLGAGKVDIVAHQMEKSKEREKK-NNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGSNDTANQLKTGRADATISTPFFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIID-----DGTLKKLSEKWLGAD............................................. 263
21 -15.900IDP05633 amino-acid ABC transporter,substrate-binding protein [Clostridium difficile 630] CD2177 [Peptoclostridium difficile 630]  ali follow..  10  8..............................................IMFALVSALLVTGCSSGNNKNKEEQKVIRVATSGT------VDFWDEFAKRTNCKVEWVLTD---GLFGLLEADKADAVSAQLTKKYAFSDAYNYSGTNIIVREDDTSIKSIDDLVGKKVGVGTGAVANEILKEKYPNDEIKIVNYSATLKGNYQDLEMGRLDAVVAQDVEALIAIKEQ-LKMIEPPIQFGACSFALQKNEKGEKWTKEINEVIEEMYKD--GTLTKISENWLGKD............................................. 259
22 -15.500IDP00474 gene: glnH; glutamine ABC transporter periplasmic protein YPO2512 [Yersinia pestis CO92]  ali follow..  13  1...............................................MKSLVKVSLAALALAFAVSAYAAEKELIVAT--DTAFVPFIDLWDAIAKKLDLKYTLKPMD---GIIPALQTKNVDLALAGITKAVDFSDGYYNSGLLVMVKADNNDIKSEADLQGKVLAVKSGTGSVDYAKANIKTKDLRQ---FPNIDNAYLELGTGRADAVLHDTPFIKTAGNGQFKAVGESIKAQQ-YGVAFPQGSDLREKVNAALKSLKE-----DGTYAEIYKKWFGVEPK........................................... 247
23 -15.500IDP90639 lipoprotein, NLPA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0771c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  1...................................................MNLFKIIILACILNLSSLFAQNITIGATPNP-FGSLLELMKDDFKNKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPV-SKKIKNLENLEGARVAIPNDATNESRALELLEKAKLKLKFIELKAAQLPRAL--DDVDIAIINSNFALGANPSKDTIFREDKNSPYVNYVVVRSEGKNSEKTKVIDEILRS------DKFKAIINEHYK............................................... 249
24 -15.300IDP91962 amino acid ABC transporter, amino acid-binding protein, putative [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007760 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  2...........................................KKFSLLLAILPFLVACGNQATPKETSAQKTIVLAT--AGDVPPFDYEDKG--NLTGFDIEVLK-TAWESIFPGLDSGHYQAAANNLS---YTKERAEKYLYLVLVSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATIGEDIGKRILDLANGEFDFLVSVQKIIKDRGLDLSVVDLPSADSPSNYIIFSSDQKEFKEQFDKALKELYQ-----DGTLEKLSNTYLGGSYLPDQSQLQ.................................... 266
25 -15.300IDP90352 hypothetical protein CT262 [Chlamydia trachomatis D/UW-3/CX] CT262 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  2........................................................................TFSAAFSPCPNDIFLFRSFLEKHKGFPSLRQIM-IADISSLNYYALETRFPLIKI---SASLYPQIADSYDVLNVGTTLGYKLSRQLDSPLKSLATPGETTTAHALCRLFYP---RAELVPMKYHEIIPAILSNRVDGGAV-ERFSFPKDLCIVEDLGQLWEKTWHLPLPLGCIVISKKLLNHALQESLKKSLTDSALAIQKASEYSDKNPTTIQHFIDTYEETFNLSSIGRQAFSTLWTACRN........... 255
26 -15.200IDP90590 lipoprotein, NLPA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0770c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  7........................................................FLSVLFTISLSFGADKTIIIGATPTP-YAEILNFSKPLFQEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGA--SNSIKDIKDINGAKIAIPNDATNESRALDLLAKANLTPIDISKNPKKLQLPRALNDTDLAIITTNYALGANPLKDGIFMEDKDSLYAIVLATRKGEETSQKSLVIKEILTS------DKIKNFIIEKYK............................................... 251
27 -15.200IDP05370 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_5220 [Bacillus anthracis str. Ames]  ali follow..  16  4...............................................LLLTALISTSIFGLAACGGKDNDEKKLVVGASNVP-HAEILEKAKPLLEKKGIELEVKKFQDYVLPNKSLADKDLDANYFQHIPYLEKEIKDKKYEFEVAGKI-SQKYKSLKELDGATIIMSNSVADHGRGLAILQKEGITPKDIADNPKNLPQVYNNKEGDAVLINSNYAIDTNPEKDAIAIESNDSPYANVVAVRKGDKDKKEIKELVEVLHS------KEIEDFINKEYK............................................... 262
28 -14.900IDP90739 lipoprotein, NLPA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0772c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  7........................................................FIASILTLSLNANALETITVAATPVP-HAEILEQVKPDLEKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAI-SKKYKSLDDIEGVKIAIPNDPTNESRALDIIAKKGLTPLDIIDNPKKIQLPRALNDVDFAVINSNYALSANPAKDSVFIEDKESPYANILVVRVGHENDPKIKALIQALQS------DKIKQFIIEKYN............................................... 250
29 -14.700IDP91966 ABC transporter substrate-binding protein - glutamine-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001092 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  2.................................KSKKWIFVLCNFLASFFLVACQSGSNGSQSAVEAIKQKGKLVVAT--SPDYAPFIDMAQAIADELGVKLEILSMS---NVLTSLQTGKADLAVAGISATDERKEV-ENKISFLVRKADVEKYKDLTSLESANIAAQKGTVPESMVKEQLPKAQLTS---LTNMGEAVNELQAGKIDAVHMDEPYAAKNAGLAVATVSLKMKDGDANAVALR---KNSDDLKEVVDKVIQKLKDE-GTYQSYLEKAASLT............................................. 267
30 -14.700IDP91967 amino acid ABC transporter, periplasmic amino acid-binding protein, putative [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008960 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  1..................................MNKMKKVLMTMFGLVMLPLLFACSNNQSAGIEAIKSKGKLVVAL--NPDFAPFIELAKAIATELGVELELSPMS---NVLASVQSGKADLAISGVSKTDERSKV-TAKNKLIVKKSDLATYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVS---LPKNGNLITDLKSGQVDAVIFEEPFVENNPDLAIADLNFEKEQDDSYAVAMK---KDSKELKEAVDKTIQKLKES-GELDKLIEDAFKASIE........................................... 267
31 -14.700IDP91031 solute-binding periplasmic protein precursor for ABC transporter [Yersinia pestis KIM 10] y4125 [Yersinia pestis KIM10+]  ali follow..  10  1..................................MKQDLSIKKSAIALTLLAGLATLSGTAYADKLDDKQAGVVRIAVFDSNP----VDVANAIAKDLGVKVELRAT-NPANRIPLLASKKVDLIAANFTITDERAKE---FATGQKFIARKGVLKTPEDIGKLRIGADKGTVQEITLREHYPTAKVIS---YDDTPLAFTALRNGNVQAITQDDAKLVGLLGNDFEISPFSITKEYQGVGIPKGEDRLTAVVNETLIKLEK-----EGDAVKIYDRWFGPETN........................................... 265
32 -14.500IDP05415 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_5219 [Bacillus anthracis str. Ames]  ali follow..  15  3................................................KILLSVVTALSVFTLAACGGKEENKLVVGASNVP-HAVILEKAQPILEKKGIKLEIKKFQDYVLPNKALADKEIDANYFQHIPYLDKEIQEKGYKIVNAGKI-SKRYKSLKDLDGGTVIMSNNVAERGRMLALLQKGGVTVKDVVENPKNLPKLYENNEGDALFINSNYAIDANPTKDAIAIEGSDSPYANIIAVRKGDEKKKEIKELVEVL------HSKEIQDFINKEYK............................................... 260
33 -14.500IDP04366 amino acid ABC transporter, amino acid-binding protein [Clostridium perfringens ATCC 13124] CPF_1531 [Clostridium perfringens ATCC 13124]  ali follow..  15  8..............................................LISIVILSILISGCSSKKIETKKDSNTVIIGIDDTFVPMGFVDLSKEAFKRMNLKVIFQPID---MKETELTNGNIDLIWNGYT---MTHEREKKVAFQVIVTLSNSNINTLNDLKGKTVTTQDGSSSLDTLFERPKLTKSGEPVLFDSFNDCFMDLEAGRSDAVVCDEIYIFKNDPSKFHVLTEDLGEES-YSIGLRKNSNLIDHLNKTLEDMKE-----DGTIAKISNKWFGKDLE........................................... 261
34 -14.500IDP90988 gene: gltI; glutamate and aspartate transporter subunit [Yersinia pestis KIM 10] y1189 [Yersinia pestis KIM10+]  ali follow..  1.............................MQMRKLALVLLLAGMTSSVAQAEDATAKADTAIDTLQKVKNNGVIVVGHRESSV----FSYYDNQQKVVGYSQDYSN--TSQNRIPLLQNGTFDF-ECGSTTNNLERQQQAAFS-TRLLTKKDSEVKDFKDLAGKAVVVTSGTTSEVLLNKLNEKDNMNMRIIAKDHGDSFRTLESGRAVAFMMDDALLAGERAKEWSIVGTPQSEEAYGCMMRKNDPAFKALLDKTIATAQT-----TGVAEKSFDRWFKNP............................................. 276
35 -14.000IDP91990 ABC transporter substrate-binding protein - unknown substrate [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004332 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  1MKLFKPLLTVLA----TACSSGGNAGSSSGKTTAKARTIDEIKKSGELRIAVFGDKKPFGYVDNDGS--------QGY---------IELGNQLAQDLGVKVKYISV-DAANRAEYLISNKVDITLANFT---VTDERKKQVDFLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKLQK---YDQYSDSYQALLDGRGDAFSTDNTEVLAWALENEVGITSLGDPDTIAAAVQKGNQELLDFINKDIEKLGK-----ENFFHKAYEKTLHPT............................................. 270
36 -13.900IDP91975 ABC transporter substrate-binding protein - glutamine transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100009843 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  3...................................KWMLVLVSLMTALFLVACGKNSSETSGDNWSKYQSNKSITIGF--DSTFVPMIDLATAVFEKYGITVNWQPID---LKEAELTKGTIDLIWNGYS---ATDERREKVAF-VLVTKKSSGITTAKDMTGKTLGAQAGSSGYADFEANPEILK-KEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYK-----DGKFQEISQKWFGED............................................. 268
37 -13.900IDP04547 amino acid ABC transporter, amino acid-binding protein [Clostridium perfringens ATCC 13124] CPF_0581 [Clostridium perfringens ATCC 13124]  ali follow..  10  1.............................MKKNIFKKILSVAMIGGLTLSLAGCGAKTAKENGSNDKVAESGKLVVGL--SADYAPYIDIAKEVAKNLGVDLEIKEME---AIIQSVKNGMIDMGISGITPDEKRKEA-EAEQGILINKDNKESIKGIGDLKGKKVGAQMGSIQA----EIAKGIEGADVKLLDNVNTLILELKTGKLDAVITELPASEVNSELAVADEVIKNSEGGSAIAIQKGNKDLVDEVNSTIKELKE-----SGKIDQFTNDAIELVPYQKKE....................................... 277
38 -13.900IDP91402 ABC-type amino acid transport, signal transduction system [Vibrio vulnificus CMCP6] VV1_1001 [Vibrio vulnificus CMCP6]  ali follow..  10  1...............................................MNNWIKASIAAIALSVATFQAVAEEVVKVGMSGR------VDMWDEIGKRNGYKVEYVTAN---GLFGLLETGRIDTISNQITAKYLFADPYVVDGAQITVRKGNDSIKGVADLAGKTVAVNLGSNFEQLLRDYDKDGKIN---IKTYDTGIEHDVALGRADAFVMDRLSALELIKKQLAGEPFETIANAWPFVNNERGVKLQGEVNKALAEMRA-----DGTVEQISIKWFGAD............................................. 247
39 -13.800IDP05446 hypothetical protein lmo1738 [Listeria monocytogenes EGD-e] lmo1738 [Listeria monocytogenes EGD-e]  ali follow..  10  2....................................KKGLLITVMLMVMLALGACSSSESKEDQWSRIKKDKEVVIGLDDS------IDLAKAVFAEYGIKAKFTPID---MKESELKNGSIDLIWNGYT---VTDARKKQVAFQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAKKPEVLT-NEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQYNIITGGFDATDFAVGMRKSDKELQKKINEAFEKLYK-----EGKMQEISKKWFGDD............................................. 266
40 -13.800IDP05630 amino acid ABC transporter, substrate-binding protein [Clostridium difficile 630] CD1774 [Peptoclostridium difficile 630]  ali follow..  10  2................................KNILKKVGIFTIMLGLLGGVVGCSKPDNEKDKDASKESKKEVVVGFDNT------VDLAKETFKRLGMEVKFQPIDWSMKETELNDSKTVDVLWNGYS---ITDERKKIVSYQIIVTLSDSKINSKADLKDKEVGTQQGSTALDAVEKDKDFMNSGAPVLYDTYDKALRDLEIGRTSAVVGDEVYMGQKGEDKYKVLKDDFGLEDYVVATSKENPELCEKINETLKEMKK................................................................. 254
41 -13.700IDP02749 amino acid ABC transporter, periplasmic amino acid-binding protein [Coxiella burnetii RSA 493] CBU_0482 [Coxiella burnetii RSA 493]  ali follow..  2................................KKNNNRAVSRFFRWIPAFVRMTGTFYFVSCLFVSPVFATDTIKFAT--EATYPPYADIVKAVCKQMQAVCTISNQP---SLIPSLKLGKFDALFGGMNKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLKGKIIGVQGGTTFDSYLQDSFGNS--ITIQRYPSEEDALMDLTSGRVDAVVLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ--ALLLKLNKALAAIKANGVAIVQKYFGQE............................................. 269
42 -13.700IDP01968 gene: fliY; cystine transporter subunit [Salmonella typhimurium LT2] STM1954 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  2................................KLALLGRQALMGVMAVALVAGMSAKSFADEGLLNKVKERGTLLVGLEGT------VDFAEALAKHLGVKASLKPTK---GMLASLDAKRIDVVINQVTISDVRKKK-VSGIQALVKKGNEGTIKTAADLQGKKVGVGLGTNYEEWLRQHVQGVDIRT---YDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTLAVTGDAFSRQESGVALRKGNEDLLKAVDNAIAEMQK-----DGTLKALSEKWFGAD............................................. 263
43 -13.600IDP01925 gene: fliY; cystine transporter subunit [Yersinia pestis CO92] YPO1846 [Yersinia pestis CO92]  ali follow..  11  1.............................MSFSIVRRRI--VLGMVAVALATGLNVKSYAAGDLLEQVKQRGTLIVGLEGT------VDFANALAEHMGVKAKITPTK---GMLASLESKRIDVAINQVTISDERKKK-VSGIQVLTKKGNEGQFTKPEDLQGKKVGVGLGSNYEQWLRENLKDVDIRT---YDDDPTKYQDLRVGRTDAILVDRLAALKKTNDALAVAGPAFARQESGVAMRKNNPELLAAVNNAIAEMQK-----DGTLAKISEKYFGAD............................................. 263
44 -13.500IDP05579 amino acid ABC transporter, amino acid-binding protein [Bacillus anthracis str. Ames] BA_0855 [Bacillus anthracis str. Ames]  ali follow..  11  2...............................KKLFSVLAVTTLAIGIVAGCGKEEKKDTASQDALQKIKQSGELVIGTEGT------VELAEEVAKRLGVKPVFKETQ---SLLAGLDAKRFDMVANEVGKKYDFSKPYVSSSAALVIAKDKDKPATFADVKGLKGAQSLTSNYA----DIAKKNGAEIIGV-EGFSQAAELLASGRVDFTISVLNYLETKKDAKIKIVDTEKEASESGFLFRKGSTKLVQEVDKALEDMKK-----DGTYDKITKKWFGEN............................................. 262
45 -13.400IDP01356 amino acid ABC transporter, periplasmic amino acid-binding portion VC0010 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  1.................................................MKHWFNIALAALALSSATVQAATEVKVGMSGR------VDVWNEIGKRNDYKVEFVTAN---GLLGLLETGRIDTISNQITAKYLFSDPYVIDGAQITVRKGNEAIKGIDDLAGKTVAVNLGSNFEQLLRNHDKDGKIN---IKTYDTGIEHDVALGRADAFVMDRLSALELIEKQLAGSPFETIENAWPFVNNEKGQQLQGEVNKALAAMRA-----DGTLSQIALKWFGTD............................................. 245
46 -13.400IDP06533 extracellular solute-binding protein, family 3 [Enterococcus faecium DO] EAN09753 [Enterococcus faecium DO]  ali follow..  2................................RRLKKIRLIFLLGIAFLALAGCKGNGLANEDILERSKSTNEIIWGVKYDTRLFGMMDIESR--TVQGFDVDIAK--TSKTRIPLLKNGNIDAIIATMT---ITDERKKQVDFQALLVKKGSQIKSVDDLNASTVLAVKGSTSAANIRQHAPDAKILE---LENYAEAFTALQSGQGDAMTTDNAILLADENPEYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHA-----DGTYDKIYQKWFPNETE........................................... 267
47 -13.200IDP05139 amino acid ABC transporter, solute binding protein [Bacillus anthracis str. Sterne] BAS0353 [Bacillus anthracis str. Sterne]  ali follow..  10  1......................................MKRKLLTIVASITLCTSFILGACSKESATTSSNGKKEFRYAMSGLYKPFVEIGEALAKKMNMKPTPITNP---TLIQGLKAKKYDVILGSMAKAVNFSNPYYRSGAQIFVAKKNTSISSPEDLKGKKIGVVKASTFKDLVAKHTDQ-----ITEYDSDITALMDLEPGRIDAVITDQMVGLRMIKENIKEAGKPLNLDEMGIAIRKDDKEMVEKVNKALDEIIK-----DGTYEKISKKWFGRN............................................. 255
48 -13.100IDP01699 extracellular solute-binding protein [Yersinia pestis CO92] YPO3343 [Yersinia pestis CO92]  ali follow..  12  2........................................QMKKLSLGIMVLALISSQHVLAKNWQEIKQSGELRIGV--PGDYAPLVDMANAFGEDLKLKVNFVSTS--PTLSDDLAADKFDIAMGGVTATSHAVVKNGKIALTHCQKVNKFPTLDAIDRQNVKVIVNPGGTNQSFVDANIKQAQI---IRTKDNVANLQGIRNKSADIMFT.................................................................................................................. 190
49 -13.000IDP02641 amino acid ABC transporter amino acid-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA0640 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  2................................LKMKKLFTLIVFSCLFVLVVAGCGSKKDEAKETNTKQKRGKLVVGVKNDTNLFGLKNPSTG--QVEGFDVDVAK--TSKTRIPLLKNGDIDAIIATMT---ITEERKKEVDFQSLLVKKGSDIKSIDDVKGVKVLAVKGSTSTNNIRQKSPEATVLE---FENYSEAFTALKAGKGDVLTTDNAILYAKQDSNYEVVGKIFTDEPYGIAVQKGADDLTKEINSLIKDMKA-----NGEYDKLYEKWIGQKPE........................................... 275
50 -12.600IDP05685 gene: opuCC; hypothetical protein lmo1426 [Listeria monocytogenes EGD-e] lmo1426 [Listeria monocytogenes EGD-e]  ali follow..  1......................................MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHDGLKVEIVNNLGSTIVQQAMLNGDVDITATRYTGTDLYGFANTYVFMVRQDTAKKYNLNTVSDMRKVENELTAGVDNSWMEREFSKAYDIEFKKIFMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDFFPPYDASALATDEILKKHPELKTTINK---------------------LKGKISTEEMQKLNYEADGKLKEPSIVAQ--EFLQKNNYFEG..... 306
51 -12.300IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]  ali follow..  10  2IELKHRTLQALRNTGS-----AAAATQLHQTQSALSHQFSDLEQREILLQLAEQVLPQIKQALQTCNEPHQTALRIAIECHSCIQWLTPALDNFHKHWQVTMDFKS-GVTFDPQPALQQGELDLVLTPRSGLHYSPMFDFEVRLVLAPDHANKDRIEPEDLAPEVMIYPVQRQRLDVWRHFLQPAGVSPSSKNVDNTLLLIQMVSARMGIAALPHWVVESFERQGLVVTK---GLWSRLYAAVRDGEQRQPVTEAFIRSARQHACDHLPFVKDAVRSNAGVPTA........................................... 309
52 -11.900IDP01430 amino acid ABC transporter, periplasmic amino acid-binding protein VC1863 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  3...............................................MKKWLVATALIATTISGVTQAKEWKTVRFGI--EGAYPPFVDMANALCAEMQVECKIVPQD---GIIPSLLARKYDAIIAAMSKKVDFTGKYAQIPNKFIAKKGADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDT--VDIVRYGSFDEAYLDLANGRIAAVL................................................................................................................... 181
53 -11.800IDP91898 amino acid ABC transporter, amino acid-binding protein/permease protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003105 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  65.......................................................................................VQIAKKIAKDLGKEPLVVKTK---GLVPALTSGKIDMIIAGMSPTAERKQETSEPVLLVKKDSAYVSAKSLDDFNGAKITSQQGVYLYDLIAQIPGAKKETA---MGDFAQMRQALEAGVIDAYVSERPEALTAEAANVEPGFKTGEEDTAIAIGLRKNDNRISQINASIETISK................................................................. 250
54 -11.600IDP01901 gene: artI; arginine transport system [Salmonella typhimurium LT2] STM0890 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  6........................................................IAALIAGFSLSATAAQTIRFAT--EASYPPFVDLANALCKEIDASCTFTNQA---SLIPSLKFRRFDAVMAGMDIT-QVLFTTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVP---YDSYQNAKLDLQNGRIDAVFG.................................................................................................................. 173
55 -11.400IDP91947 amino acid ABC transporter, amino acid-binding protein/permease protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001889 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  221................................TEFNQALAEMKKDGSLDKIISSAVPTTTTLAGLKAIPVKAKYIIAS--DSSFAPFMELIKAIAKDQGFEIEITNPG---AAISAVQAGQADGIIAGMS---VTDARKATFDFTILGVKESSNIASYEDLKGKTVGVKNGTASQTFLTENQSKYGYK-IKTFADGSSMYDSLNTGAIDAVMDDEPVLKYSISQG-TPISGTPIGETAFAVKKGANPELIEMFNNGLANLKA................................................................. 474
56 -11.400IDP00526 gene: artI; arginine-binding periplasmic protein 1 precursor YPO1351 [Yersinia pestis CO92]  ali follow..  10  6........................................................IATVLASISLSASAAETIRFAA--EATYPPFIDLANALCKEMQADCTFTNQA---SLIPSLKFKRFDAVISGMDIT-QVAFTQPYYDNSALFIAQKDKVADLAALKGKRVGMQNGSTHQKYLMEKHPEITAVP---YDSYQNAILDLKNGRLDAVFG.................................................................................................................. 173
57 -11.100IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1MASLIQVRDLLALRGR--MEATQISHTLHAPQPMIDAMLNQLEIMGKAVRI.................................................................................................................................................................................................................................................................................... 49
58 -10.500IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]  ali follow..  12  1MNIKSQLFIHLCDSKN-----AKTAAAMHISPSALSRQIQKLEEE---ALKMLNEWQQYQLQNRYSETELKGEIRLFCSVTASYSHLPELLSEFRLQHFIEFKISTGDPA-QAMDKILNGEADIAISAKPDTVPAKVAFEPIPLSVIAPQGVSSFRDKPDWSSIPYIVPEAGTARERANTWFKKMKIKPNIYAQVSGEAIVSMVALGCGIGIAPDVVINNSPVKEKIQRLKVAPIKP-LGVCCIKSQLENPLIQALWKVAESKYI.............................................................. 294
59 -9.920IDP00626 gene: sarT; staphylococcal accessory regulator T SACOL2506 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  39......VLAYLFKNDEGKYFMRDIISYIGIDQSRIVKSVKDLSKKGYLNKC.................................................................................................................................................................................................................................................................................... 85
60 -9.820IDP00827 gene: sarU; staphylococcal accessory regulator U SACOL2507 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  32LSLKELILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFINKSR--------------NEADERRIFVSVTPIQRKKIVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLDLSILYVISSRKNEILNLKDL-FESIRFMYPQIVRSVNR--LNNKGM............................................................................................................................................ 204
61 -9.650IDP04639 gene: oxyR; oxidative stress transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] FTT0556c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1MNTRTEYIISVYETKS-----ITASEKCFVSQPALSMQIKKFEEY---AYKILDEVNNLKKIAELLLENGKISITIGAFPTLCPYLMPKILPAIKQELNLSIAVIEEKTD-ILVKMLDQGKIDFALLYQFHRKKVFDDKFYVAVAKTNPLAKNKQICIREIVKQNMLLDEGHCLRDQTLKLCALKEFNNNDFKGSSLETLRQMVSIDEGITLVPKIACTKADNVKYIDIDNRDFYRE-IDLVMRKSSIYEDLFAKIAKIISNN................................................................ 288
62 -9.630IDP00173 putative membrane protein YPO2922 [Yersinia pestis CO92]  ali follow..  12  28..............................WRNGQEGQLDQIKARGELRVSTISSPLIYSTEKDTPSGFDYELA-----------------KRFADYLGVKLVIIPHHNIDDLFDALDNDDTDLLAAGLIYNARTGPAYYSVSQQLVYRLGSPRPKSFSDLKGQVVVASGSAHMTTLKRLKQTKYPELNWSSDKSGKELLEQVAEGKLDYTLG.................................................................................................................. 201
63 -9.220IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  1MELSPVFARRLY-ESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELN..................................................................................................................................................................................................................................................................................... 54

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.