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Query: [S] COG4344 Uncharacterized protein conserved in archaea, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEYEKEIDELINDYDMLRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTSIKRTEAKLKKSAEVHKHHTYYQINKKAEAVLKEITPKLYVHHLKSADLQMLCSRKERKENPEACSSLLRMGLIDKCYDLTDLGREVFDTARRMQILHCEDRNLast
1 -39.800IDP00219 probable deoR-family transcriptional regulatory protein YPO1938 [Yersinia pestis CO92]  ali follow..  9  1..........MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRLAIEPSHQDKTMM---------FSRQKQAIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVVTNDFVIANFLIESCRMIHSGGTLCRKNRS 151
2 -37.500IDP00414 gene: deoR; DNA-binding transcriptional repressor YPO1322 [Yersinia pestis CO92]  ali follow..  7  2.........ETRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVILLGGYVVMDPKSNNANNYFVSDQQAK---------QVEEKRRIGQLAAQLIIENDTVFFDCGTTIPWIIDEIDEELAFTAICYSLNTFLALQDKCKVILCGGEFKPNNCI 153
3 -17.000IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  1MASLIQ-------------VRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEP...................................................................................................... 53
4 -15.300IDP93833 DNA-binding transcriptional repressor ArsR [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007538 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  1MTLTSLQLFKNLSDETRLGIVLLLKEMGELCVCDLCTALDESQPKISRHLAMLRESGLLLDRKQGK------------------VHYRLSPHIPSWAAQVIEQAWLS............................................................. 90
5 -14.300IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  1MELSPV--------ARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDG...................................................................................................... 59
6 -13.900IDP00094 gene: lrp; regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system NT01SF0993 [Shigella flexneri 2a str. 2457T]  ali follow..  13  1MVD-SKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG........................................................................................................... 60
7 -13.900IDP00125 gene: lrp; leucine-responsive transcriptional regulator NT01ST1183 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1MVD-SKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG........................................................................................................... 60
8 -13.900IDP00626 gene: sarT; staphylococcal accessory regulator T SACOL2506 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  24....KYLKKYFCLTLDNYLVLAYLNDEGKYFMRDIISYIGIDQSRIVKSVKDLSKKGYLNKCRD--------------PHDSRNVIIVVSVKQHNYIKNLLSE................................................................. 112
9 -13.200IDP00642 gene: sarZ; staphylococcal accessory protein Z SACOL2384 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  25.KKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTRE--------------EKDERNLQISLTEQGKAIKSPL.................................................................... 109
10 -12.900IDP91319 transcriptional regulator [Vibrio vulnificus CMCP6] VV2_0325 [Vibrio vulnificus CMCP6]  ali follow..  7  39.SAVGEVHKRYDLKMGEFDVVATLRRSGAPYPSELLGSLMLTSGAMTNRLDKLEQKGLISRQHS--------------KEDRRSVTVELTEHGLVTVNKLIEE................................................................. 129
11 -12.100IDP00724 gene: arsR; arsenical resistance operon repressor SACOL1822 [Staphylococcus aureus subsp. aureus COL]  ali follow..  17  3YKELATFLKVL-SDSSRLEILDLLSC-GELCACDLLAHFQFSQPTLSYHMKALVKTNLVTTRKIG-----------------NKHLYQLNHN............................................................................ 75
12 -12.000IDP02193 arsenical restistance operon repressor [Francisella tularensis subsp. tularensis SCHU S4] FTT0868c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  3LANIVDFQKAL-GDETRIRILMVIYQ-HQLCLCHLAHIFKLANSTLSKHLDILRRNGFIHKRKQG-----------------RFHYFYFNSAYQQQLNWLFD.................................................................. 85
13 -11.600IDP00871 gene: slyA; transcriptional regulator SlyA STM1444 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  18.ALIDHRLKPLELTQTHWVTLHNIHQLPPQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISR--------------QTCASDRRAKRIKLTEKADALIAEM.................................................................... 103
14 -11.500IDP00779 gene: sirR; iron-dependent repressor SACOL0691 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  6............KEDYLKAILTNNGDKNFVTNKILSQFLNIKPPSVSEMVGRLEKAGYVETKPYKGVRLTEDGLTHTLDIIKRHRLLEL............................................................................... 82
15 -11.400IDP00098 gene: slyA; transcriptional regulator NT01SF2011 [Shigella flexneri 2a str. 2457T]  ali follow..  13  20.ALIDHRLKPLELTQTHWVTLHNIHQLPPQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISR--------------QTCASDRRAKRIKLTEKAEPLISEM.................................................................... 105
16 -11.000IDP90978 hypothetical protein y0549 [Yersinia pestis KIM 10] y0549 [Yersinia pestis KIM10+]  ali follow..  14  1MLLSTK--------FRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALKELRET................................................................................................................ 49
17 -10.700IDP05513 putative transcriptional regulator [Clostridium difficile 630] CD0278 [Peptoclostridium difficile 630]  ali follow..  13  25.........DIVGGKWKLPIICMLAVENPIRYSSIKRKLGITNTMLAQSLKDLESTGIVHRKQYNEIPPK--------------VEYTLTSKGKSIVPILQQ.................................................................. 104
18 -10.500IDP00827 gene: sarU; staphylococcal accessory regulator U SACOL2507 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  32............LSLKELLILAYFKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFINKSRN--------------EADERRIFVSVTPIQRKKIACVINE................................................................. 110
19 -10.500IDP95184 gene: lmo0178; lmo0178 [Listeria monocytogenes EGD-e] CAC98393 [Listeria monocytogenes EGD-e]  ali follow..  17  1MDILRKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEG.......................................................................................................... 62
20 -10.400IDP92553 gene: fadR; fatty acid metabolism transcriptional regulator FadR [Vibrio vulnificus CMCP6] VV1_2233 [Vibrio vulnificus CMCP6]  ali follow..  14  1MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAELSELIGVTRTTLREVLQRLARDGWLTIQHGKPT..................................................................................................... 69
21 -9.900IDP02409 hypothetical protein Cj0883c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0883c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  12.................LSLIYISQKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKG........................................................................................................ 58
22 -9.720IDP02786 gene: perR; FUR family transcriptional regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0322 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  18  2..ELLQMLKKLKATPQRLCVLKILKRHEHPNIDELYIEISISLATVYKNLNTLQEQGLVVEIN---VLNQKTCYDIYEEEHIH..................................................................................... 86
23 -9.530IDP91880 hypothetical protein lmo0753 [Listeria monocytogenes EGD-e] NP_464280 [Listeria monocytogenes EGD-e]  ali follow..  11  140FEYIGEKVRMVSEDSVRAKISNYLFGIQDDD-EEIADYLDITRPSLSRELGRMQKENIIR............................................................................................................ 207
24 -9.340IDP90975 hypothetical protein y0011 [Yersinia pestis KIM 10] y0011 [Yersinia pestis KIM10+]  ali follow..  17  11....QRNLSYLLAEKIGQRILAGEYEAGSILPGELGEQFGVSRTAVREAVKMLAAKGMLLPRPRIGT..................................................................................................... 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.