Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [S] COG4818 Predicted membrane protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MSYNTSLGLSENIVAALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIGNIAYNFAYGELast
1 -4.810IDP91913 cell wall surface anchor family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006539 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  18  301....PNTGSASSAALASLGLVVATSGFALLGRKTRRR.......................................................................... 333
2 -4.620IDP91549 hypothetical protein CPF_1846 [Clostridium perfringens ATCC 13124] CPF_1846 [Clostridium perfringens ATCC 13124]  ali follow..  12  84................FSHRASVLIGLMLIMTSKEVFFKVKRAYYVTLTLLIVGGAFAFVKDLDYKEGIFILGVIILLI................................ 146
3 -4.600IDP04715 general secretion pathway protein G [Yersinia pestis CO92] YPO0813 [Yersinia pestis CO92]  ali follow..  16  1MANKKTKGFTLLEIMVVIVILGLLASLTIPSLMSNKNRADQQKAVSDISALENAL........................................................ 55
4 -4.170IDP05675 hypothetical protein lmo0953 [Listeria monocytogenes EGD-e] lmo0953 [Listeria monocytogenes EGD-e]  ali follow..  14  1..MKNKVGI---IAGAVGAVAGVLACAAVYVVKKQQPPTPFDEVNDI................................................................ 42
5 -4.070IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  10  2....................................KKMKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEK 76
6 -3.930IDP06442 gene: A43R; A43R [Monkeypox virus Zaire-96-I-16] NP_536580 [Monkeypox virus Zaire-96-I-16]  ali follow..  15  3...............MMKWIISILTMSIMPVLTYSSSIFRFHSEDIELCYGNLYF........................................................ 42
7 -3.840IDP00890 gene: yibR; putative inner membrane protein STM3720 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  2  43..................FIMPAGVAIYSIIENNKDIDYALKQKERCQVKITL.......................................................... 77
8 -3.830IDP91481 cytotoxic necrotizing factor [Vibrio parahaemolyticus RIMD 2210633] VPA1321 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  23  192...RGVNGLKIPLSEFFLFSNGALSGCMTCTAIDKNNLYIFHVGKD................................................................. 239
9 -3.670IDP00105 gene: S3225; putative class II aminotransferase NT01SF3662 [Shigella flexneri 2a str. 2457T]  ali follow..  17  83.......................ANGSYAPHLALEKEIAEFFNRPTAIVFQP........................................................... 111
10 -3.600IDP01897 putative metalloendopeptidase [Salmonella typhimurium LT2] STM3038 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  151IAGARGTPVYAAGAGKVVYVGNQLRGY-LIMIKHNEDYITAYAHNDTML.............................................................. 200
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.