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Query: [S] COG5501 Predicted secreted protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLILALIPVTLTASLALAEPEKPNNPLADGTTWRDLKGDVVGEAAILDGSALFSVTAPYRANDAATVPVTIEQTDAAADPIESLKLVIDENPAPVAAEIRFGPAMAPLKFETRVRVNQYSNIRAIAETPRGIFMHGRFVKASGGCSAPATKDPVAALKDMGEMRLKLFGGKGEVQKARREAQIMIRHPNYSGLQRDQITQLFVSAKFITELVVKQGDELLFALDGGISISENPVFRFSYTDNGAPDFTVHAVDTDGNVFDRVLPKTPPALast
1 -10.100IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  8  1MKKLIMTLFIAMLALAGCNTNKEEPKKEQKLEAVK------------------VAVQTPKEIKPGEKTEVQALVTQGKETDADDVKFEVWKAGDEKHEMLEGKHGKGVYAVEKTFETDGVYHIIAHTNAREMHVMPEVKVAVGNAKVEDAKKENSDHGAGHGDHKSDTMMAGDIKANAESTMKVHLKQ-----------KEEALTGAEVQLEIWKDGVEKHEFIPAKE--GNKGEYETKHTFKENGSYKVKVHKKGELHEHKEETVEVK. 246
2 -9.220IDP05407 conserved domain protein [Bacillus anthracis str. Ames] BA_1485 [Bacillus anthracis str. Ames]  ali follow..  6  1MKNLVIGLVALLFVVVGGFYIKKYQETTETVGDVQEVKWD------------------VSNGKGNEKADIVFQLLNNKSSEVDQIRAVIVDGQLKHVQQTK--AGNGSYKVSSKIAKDEGYTIFLYEDKNKSVQSFAKKDFGKEIDEKNKKKVKFPIDSVLTKKIGEYLLFGALHPNEPVTLTFQFQAKKGEKLKLHAERGE-----VEALYIVDETRENFLYAI---PVDTDEQLQYRITFPAEGTYKIWGDYINGKKYEKEFIVQVQK 253
3 -8.590IDP05275 hypothetical protein lmo2686 [Listeria monocytogenes EGD-e] lmo2686 [Listeria monocytogenes EGD-e]  ali follow..  5  1MKEFLFFAVFTFIMTIGVGVINASASEIENPDNIQEAEVETFDLNGNIAQEKEIV-------EDGTEGTLGVMPIIDERPLLKGTYSLANGT-----STWKIYWYSGVYNCSFNAKINVSKGKGKITSAYNPWYQF...................................................................................................................................... 125
4 -6.810IDP93873 putative fimbrial chaperone protein [Yersinia enterocolitica subsp. enterocolitica WA-314] EKA26882 [Yersinia enterocolitica subsp. enterocolitica WA-314]  ali follow..  12  20.................................................AQAGVAIGGTRVIGAKKEATLSVNNQDKNIPYLIQSWVDNIEATNHNKVPFIITPPL------FRLDGGQESNLRILFTGGNLPQDRESVHWLNVKTIPSSKKTNGNQLFISIKNRIKLFYRPAGLAGNAADAYKALSFSRHKQLQVSNPT-----AYYVSFHTLKVGGSEIKGALM---VAPKGILSVDLPAGAAGVVSWQAINDFGGTSDVATA..... 224
5 -6.670IDP05698 hypothetical protein lmo2186 [Listeria monocytogenes EGD-e] lmo2186 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVI-DSDSASMANDYFDKPATVTVNGGK---STVSLQVNHSKWITGLWVVTSKNASSDTRKVSFPVSTLSNPVNAKIKVD........................................................................................................................................................ 122
6 -6.180IDP93899 hypothetical protein YE3559 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007717 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  7  1MKSKKSYSYYLILILSLVLSGCTLPTDNSHNYNGGYIQGNILSNSKTIPENVKITLSLSQNKASGEKEYMLHE---------YSFMTKTKSLTIPFRLQLPNELSLSSQPLNISVRVEKEGKLIMMSDK............................................................................................................................................. 125
7 -6.140IDP90326 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_351 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  6  1MKRFFPLFIGVLLAHTLPSEGLSHQQAVQKKISYLSHFKGITG---IMDVEDGVLHIHDDLRLQANKAYVENRTDCGIKIVAHGNVMVNYRGKILICDYLEYYEDTDSCLL-----TNGRCSLYPWFIGGSTITISPSSIIIHKGYISTSEGPQKHICLSGDYLKYSSDSVLSMG-----PSRLSICN---------------TPVLLLPQISIMPMEIPKPPITFRGGSGGF--YSPISKKHCSTTLFLDGFFKHGIGLGYNMRFSSQE 248
8 -6.140IDP02471 hypothetical protein lmo0880 [Listeria monocytogenes EGD-e] lmo0880 [Listeria monocytogenes EGD-e]  ali follow..  6  1MKKRWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNGEQATNENSKVRVVITQPVASGETMTLTIPDQLKLINYGG----LMDSQ---TIANATIDQVTGTITLTFTDYVNTHTDL-------SGSLFYNATFNSK-----QTDQVNPIAFPVKNTTQTVTPYISKVNSGGGTGSPTIVF---KQGRMDDKDLSIL-------TVTLNNALTPIDNAVYTDTLGSG..................................... 218
9 -6.130IDP01769 putative inner membrane lipoprotein [Salmonella typhimurium LT2] STM2532 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  5  853.....................................................LALESPAKMRPNQPLTVRVKASVKHGEMPKNVLVSAVDSGVLNITDYATPDPWQAFFGQKRYGADIYDIYGQVIEGQGR-----LAALRFGGDGDDLKRGGKPPVN---HVNIIAQQAQPITLNEQGEGVVTLPIGDFNG---------------LRVMAQAWTADDFGRGESKVVVAAPPRF---LAGGDVSRLVLDVTNLTDRPQTLNIALAASG 1053
10 -6.100IDP91533 gene: omcB; OmcB [Chlamydia muridarum Nigg] TC_0727 [Chlamydia muridarum str. Nigg]  ali follow..  13  220.....................................................VKQEGPESACLRCPVTYRINVVNQGTATARNVVV---ENPVPDGYAHASGQRVLTYTLGD-MQPGEQRTITVEFCPKRGRVTNIATVSYCGG---HKNTASVTTVINEPCVQVNIEGADWSYVCKPVEYVISVSN---PG-LRDVVIEDTLSP-VVEAAGAQISCNKLVWTLKELNPGESLQYKVLVRAQTPGATHMCVVDTCGENTVYRICVTNRG 467
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.