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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -38.500IDP91403 integral membrane protein [Vibrio vulnificus CMCP6] VV1_0950 [Vibrio vulnificus CMCP6]  ali follow..  34  1........................................................MKKSNLAVTAVVTGLI--AMGGTMLTAAPAMAAEKEKCYGVAKAGKNDCATK-TSSCAGTAKEDNQKDAFVVVPKGLCGKLAGGNTQSS..... 86
2 -6.990IDP00452 electron transport complex protein RnfB YPO2245 [Yersinia pestis CO92]  ali follow..  14  25..AARRFQVDEDPVVEQVDA-PQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQVMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTK-----CIQ----ACPVDA-IIGATRAMHTVLSDLCT............... 148
3 -6.560IDP01810 gene: ygiB; hypothetical protein STM3187 [Salmonella typhimurium LT2] STM3187 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1.........................................MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTA------NNALKEAERTAPKYATREDCVA.............. 90
4 -6.250IDP01655 gene: katG; peroxidase/catalase [Francisella tularensis subsp. tularensis SCHU S4] FTT0721c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  477...DSASTYRKTDYRGGSNGARIALAPEKDWQMNEPA-----VVLTKLKEIQTNFNNSKTDGTKVSLADLIVLGGNVGVEQAAKQAGYNIQMP----FVPGRTDATQAQ......................................... 576
5 -5.920IDP02780 NAD-dependent epimerase/dehydratase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA0507 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  7ITGGAGFIGSHLAEELVGRGYNVTIVDNFYKGKNKY-MKEIRVIPISVLDKNSIYELVNQHDVVFHLAAILGVKTTMEKSIELIETNFDGTRNILQAALKGKKKVVFASTSEVYGKAKP............................... 128
6 -5.660IDP90983 gene: katG; catalase-peroxidase [Yersinia pestis KIM 10] y0870 [Yersinia pestis KIM10+]  ali follow..  13  486...ASASTFRGTDFRGGDNGARIRLAPQKDWPVNDPA-----SVLAALMEVQNNFNKDRSDGKKVSLSDLIVLGGNAAIEDAAKKAGYSISIP----FTPGRTDASQEE......................................... 585
7 -5.590IDP92695 hypothetical protein SAVC_11595 [Staphylococcus aureus subsp. aureus VC40] YP_005291898 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  11  78.....KYATGRTPRKFAV--GHVAVVEQVYKN...................................................................................................................... 110
8 -5.570IDP01726 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5252 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  37.......ITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDEEITVTENAIKTESQSKKIKLRAGEKLKRD-------EALKLMLIISADPIAESIAEHIAGSKN................................ 140
9 -5.420IDP95388 set238a-025 [Vibrio cholerae]  ali follow..  15  51......YIPIEKPCLNLLARNE---YEYCVINEGENLSNGDKEG------------------------FFITLDSVSESSVSFSYNTIWYSVNCRLSISDKKIKCDKAE......................................... 127
10 -5.400IDP01706 gene: ydhL; putative oxidoreductase [Salmonella typhimurium LT2] STM1438 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1................................................................................MAEQLEFFPVASPCRGI-------CQSDERGFCRGCMRSRDERFNWQKMSDVEKQNV............. 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.