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current user: public |
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| Query: [F] KOG1567 Ribonucleotide reductase, beta subunit, from VFDB |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 | |||||||
| # | Score | Template | Links and tools | %id | First | MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF | Last |
| 1 | -90.000 | IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`] | ali follow.. | 20 | 2 | .......................................RAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEI-DEIFDWVDTHPLLEKKAGIITSYYRRTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAKETQELLMELYEIEMAYTEEIYTS---IGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFN... | 321 |
| 2 | -89.200 | IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4] | ali follow.. | 18 | 1 | ..................................METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEI-EEIFEWTNTNPYLQKKAEIVNEIYL--NGSPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEWMYDLLYTLYENEEGYTESLYDG---VGWTEEVKTFLRYNANKALMNMGQDPLFPDSAPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDD-YNYGLH. | 320 |
| 3 | -88.200 | IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+] | ali follow.. | 17 | 8 | ....................................TRISAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIIS---QHYHNDDPLKKKIASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSNFAFDLLQDLYDNEVRYTEDLYDH---VGWTEDVKKFLHYNANKALMNLGYEALFPASQAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDE-----DWDF | 323 |
| 4 | -85.700 | IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978] | ali follow.. | 22 | 1 | MARASEALEHLDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSETEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAADPTFHTGTPENDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFAVTNPFAWMSEMDLRKEKNFFETRVTDYQTGGALS............. | 360 |
| 5 | -10.800 | IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124] | ali follow.. | 9 | 13 | ...............................................................................NLKCNDLRMAKFLISQYGGPDELSAALRYLNQRYTMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFYSDAQGQAKGDVVADLHEDMAAEARATYQWLINLT--------QDIKEILRFLREREIVHFQRFGEALMDVQDKMKCKK..................................................................................................... | 188 |
| 6 | -5.150 | IDP01174 hypothetical protein BA_2823 BA_2823 [Bacillus anthracis str. Ames] | ali follow.. | 9 | 1 | ...........................................MNNILNQIKKEVNMDLLNGLWKRAAFALYDDEHVYPLFLKDNDEYRVLKWEEQFKGDTCILFKDYPTAIVNMNRYKDYASLLAIVVHELFHCYQYLNKESRFPNESLGFQYPIIEENIQLRNKERICLYDAVHCKSQAEKNNYIKQFISIEGPAWYVEMNAYNTVCKSDESDTLRKYSGLILDVYDANCNMRKSCYSSLLDEILPEWKISFFNSDKSLY-AFLKQNINVDLSLNNEITISKETKQILHFVQNERDIKQFYGEEGYIVGDIKLNSFNPMNVKLNGNKVLHKTFLSVSIHNKTYMINQP. | 346 |
| 7 | -4.670 | IDP02347 gene: ftnA; ferritin [Yersinia pestis CO92] YPO1783 [Yersinia pestis CO92] | ali follow.. | 11 | 3 | ...................................................................................................................................................................................KKEMAQKLNEQLNLEFYSANLYLQMSAWCSDKG-FEGAAAFLKKHSQEEMQHMERLFEYLSG-APPVDFASLADVFKLTYEHEQLITTQINELAHVAMTTHDTFNFLQWYVAEQHEEE...................................................... | 131 |
| 8 | -4.520 | IDP01358 ferritin VC0078 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 9 | 9 | ...................................................................................................................................................................................SQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKG-FDGAAEFLRAHAVEEMQHMQRLFTYVSE-APRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDTFNFLQWYVAEQHEEE...................................................... | 137 |
| 9 | -4.400 | IDP01129 ferritin BA_5296 [Bacillus anthracis str. Ames] | ali follow.. | 11 | 3 | ...................................................................................................................................................................................SKKLHDALNDQMNFEFYSAHAYMAMAAYCTAES-YDGFANFFLVQAEEERFHAMKLYNYIND-NPNNEYESVLNAFEVALEHEREVTKRIYNLSDIAWDERETITFLKWFVDEQVEEE...................................................... | 131 |
| 10 | -4.390 | IDP00977 gene: ftnB; ferritin-like protein STM1932 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] | ali follow.. | 5 | 3 | ...................................................................................................................................................................................AVGMVQKLNTPMNLEFYASNLYLHLSEWCSEHS-LTGTATFLRTQAQGNVTQMMRMFNFMKN-VPGEELCSLEELFQKTLEDYQQRASTLSRLADEAKALNDTLDFLHTLEKEQQQD....................................................... | 130 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86. |