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Query: [S] KOG2632 Rhomboid family proteins, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPNIVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMLIVTHPVSMSSSSLASLGDPSSLCVLAGILPAIFPLILHKTQHPGNAWRSLSSWLPQREASNQSSEDSRFPGRGRTLSTARDPTAPAGETDPNLHARLLEDSSSPDRLSDATVNTVADSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQVLast
1 -8.720IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  7  4...................................................................................................................................................................................................GNRKALLISLIMI----------------LSMVVSTIYPTVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDETIETESMKKISFNLTYTPTSKGIQAGD---SITFKVPDVF 226
2 -8.450IDP02709 gene: tsf; elongation factor Ts [Bacillus anthracis str. `Ames Ancestor`] GBAA3964 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  19  1...............................................................................................................................................................................................................................................................................................................................................................................MAITAQMVKEL-KTGAGMMDCKKALTETNGDMEKAIDFLREK.. 43
3 -7.420IDP06279 gene: tsf; elongation factor Ts [Streptococcus pneumoniae TIGR4] NP_346622 [Streptococcus pneumoniae TIGR4]  ali follow..  21  2...............................................................................................................................................................................................................................................................................................................................................................................AEITAKLVKEL-KSGAGVMDAKKALVETDGDIEKAIELLREK.. 44
4 -7.400IDP91194 Stage III sporulation protein AH BAS4090 [Bacillus anthracis str. Sterne]  ali follow..  8  10................................................................................................................................................................................................................................LTMLSLVVVLSVYYVTTPDKMNTASPATGEKIGQEKQGTDKAVTNETPIKETTKESSNKENTSKETPNKETNKETDKKESATKETSKKEANVTVQSSDENFTALRMQMEDQRSEQKARLQEVMNSAKSSATEKSKAKDNFDAITTMETKQLETVIQGGYDGTDIKVTVKAAKHSQKEANKILVRSEG 209
5 -7.400IDP05572 stage III sporulation protein AH [Bacillus anthracis str. Sterne] BAS4090 [Bacillus anthracis str. Sterne]  ali follow..  8  10................................................................................................................................................................................................................................LTMLSLVVVLSVYYVTTPDKMNTASPATGEKIGQEKQGTDKAVTNETPIKETTKESSNKENTSKETPNKETNKETDKKESATKETSKKEANVTVQSSDENFTALRMQMEDQRSEQKARLQEVMNSAKSSATEKSKAKDNFDAITTMETKQLETVIQGGYDGTDIKVTVKAAKHSQKEANKILVRSEG 209
6 -7.380IDP00742 gene: tsf; elongation factor Ts SACOL1276 [Staphylococcus aureus subsp. aureus COL]  ali follow..  21  2...............................................................................................................................................................................................................................................................................................................................................................................ATISAKLVKEL-KTGAGMMDCKKALTETDGDIDKAIDYLREK.. 44
7 -7.330IDP93916 type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007700 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  6  171...............................................................................................................................................................................................................................................................KREGNKDEMSDTSVSQDRSDSSGSTVKQPIAASFESLREATSSVPLAESQENTLGDEQTHLLTTQQLAGQPLATQPPAVTQPEEMKTPSKAEMTALPEPVATESEPTAGRRTLSYTFTQWTNSPMVKFELSKAGELTAMTSAEVQLALQLLESEN. 330
8 -7.150IDP04254 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1823 [Clostridium perfringens ATCC 13124]  ali follow..  7  56................................................................................................................................................................................................................................................SSSRSSGSSSRSSSKSSSYNSSKKYSKPSSSSSEKKKSQGNSNYSTTDKFNKPSSGSNSSSDKVESGKDSSNSDKGSKQGNNNYSTTDKFNSKAPNNQEGSSKENNKYENNDKSSGSSNKSYRSSNSGGFSFFDMLMLNNILNMFGNMFSFMFIRRPFIGIGTILLIALII 226
9 -7.150IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  6  24.......................................................................................................................................................................................IRKFTVGTAS-------ILIGSLMYLGTQQEAEAAENNIENPTTL------------KDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEASVKAEDISKKEDTPKEVANVAEVQPKSSVTHNAEAPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSVDIQKNPTDLGVSEVTRFNVG----NESNGLIGALQLKNKIDFSKDFNFKVRV 228
10 -6.980IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  8  13........................................................................................................................................................................................KGMISNRLNKFSYTVGILVGTTLIFGLGNQEAKAAE--------------------NTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEE. 224
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.