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Query: [S] KOG2889 Predicted PRP38-like splicing factor, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANRTEKAAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYLEPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWALEEVDMLPSYKSLLDGDLVAMSDSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLERLast
1 -10.200IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  10  10.....................................................................................................................................GPTESRLQHIPFSTTRYLPIRSHVLQSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFD 196
2 -9.600IDP04254 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1823 [Clostridium perfringens ATCC 13124]  ali follow..  6  33.........................................................................................................................................................................KAETFGIENTIAKGGRSSGGGSRSSSRSSGSSSRSSSKSSSYNSSKKYSKPSSSSSEKKKSQGNSNYSTTDKFNKPSSGSNSSSDKVESGKDSSNSDKGSKQGNNNYSTTDKFNSKAPNNQEGSSKENNKYENNDKSSGSSNKSYRSSNSG 183
3 -9.580IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  8  27........................................................................................................................................................................................TVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLED 162
4 -9.030IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  6  1........................................................................MINR----NKKAITKKGMISNRLNKFIR-------KYTVGTASI------LVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLK 233
5 -8.860IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  9  109.........................................................................................................................................................KGDGKDEIIRKVTKIDVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDDISKMEKESKELKEKLDKLNQEIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKKANEVGRAPVMHNPTVTPISPISGIKQGTGNVS 275
6 -8.840IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]  ali follow..  6  20............................................................................................................................................................................................QDSDQQKDSNKEKDDKAKTEQQDKKTNDSSKDKKDNKDNSKDVNKDNKDNSANDNQQQSNSNATNNDQNQTNNNQSNSGQTTNNQKSSYVAPYYGQNAAPVARQIYPFNGNKSQALQQLPNFQTALNAANNE 151
7 -8.730IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  8  1........................................................................MINR----NKKAITKKGMISNRLNKFIRLVGTTLI----------------LGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSN 241
8 -8.320IDP92794 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36653 [Vibrio cholerae O1 biovar El Tor]  ali follow..  16  1..................MNKEKLLQLRLYGAIAYLILAFCLWFFGLYFALWLFCGWEFNEWIFVRCITCCCLVYKLNFIPPTQ............................................................................................................................................................................................................................................ 66
9 -8.140IDP05543 hypothetical protein CD2628 [Clostridium difficile 630] CD2628 [Peptoclostridium difficile 630]  ali follow..  8  412............................................................................................................................EGYSNIVFKPGFIMGGGDNQETPDDERENDDIDGDRGGGGRDDPDRDEDDNNQDGNNGNENNDSNNNQNNNNENNNNENDDSDEKQPNTPKDDVESSTDSNENKNPHDIPKDGNKENNSDKEKGFYNKNSITENDDNYDLSSKSVFGTNEHSFPYRESISNKNQDTNKNKSNISDYDGIINNNYKLESKEYNLKKD 607
10 -8.110IDP06021 hypothetical protein TGME49_078860 [Toxoplasma gondii ME49] XP_002370589 [Toxoplasma gondii ME49]  ali follow..  8  206...........................................................................................................................................................................EKKKKKKKKNGESDSADAVEGAPLETGREKEKKKAEHRFEAEAIESEGGKKKKKDCPPASAPGSEADDGQQTEDAQERLGKSVSEEERKKNKGEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEK 354
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.