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Query: [R] KOG3263 Nucleic acid binding protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSSRSGEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDKDGSLEVGKSHDAMTRTKSAEEEIVEQEDEATAEMKRIMGFSGFDTTTGKKHGDVGQVYKQKKTKYRQYMNRPGGFNRPLDNELast
1 -12.600IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  9  35.QSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQRQSLGDSSALDLFGSDTGDTGDIFGFSNSSSDGGNAAANDGGLFSSSGMGPTGASDE........... 266
2 -10.600IDP05543 hypothetical protein CD2628 [Clostridium difficile 630] CD2628 [Peptoclostridium difficile 630]  ali follow..  6  422.GFIMGGGDNQETPDDERENDDIDGDRGGGGRDDPDRDEDDNNQDGNNGNENNDSNNNQNNNNENNNNENDDSDEKQPNTPKDDVESSTDSNENKNPHDIPKDGNKENNSDKEKGFYNKNSITENDDNYDLSSKSVFGTNEHSFPYRESISNKNQDTNKNKSNISDYDGIINNNYKLESKEYNLKKD......................................................... 607
3 -9.900IDP05070 putative surface protein [Clostridium difficile 630] CD3246 [Peptoclostridium difficile 630]  ali follow..  9  14...................DEVTSNDTILNGEEQSNGQTPDVEKPSDGQVPGGEKPSDSQVPDGEKPSDGQVPDGEKPSDGQIPDGEKPSDGQIPDGEKPSDGQIPDGEKPSDGQMPDGEKTSDSQTPDVEKPSDGQMPDGEKPLDEQTPEEEKPLEEEIVIEEMSLKQDIDKILDMTLSQINKIVYNFWEDEEDVKADEQSEINQVFTSEDSFISLWYDKKAKVKNSCLLKEIDGSDRPYHDL 238
4 -9.580IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  6 1758.SSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLAGR........... 1989
5 -9.540IDP92020 cyclophilin, putative [Toxoplasma gondii ME49] TGME49_120640 [Toxoplasma gondii ME49]  ali follow..  14  1MSSSENGHGELASSRKHKERRHRRNEEERKKEREETQREEREREREREDRNSVRDRRREAEDSSSDSDRETKPRERRPAELTDSDDDRRPAAGHGVSADGEKDTSRGGEEEKRKEQREDERRKPGGMKPASTSTHSDGDESSDDDSFGPAPVAKGGRGAPGLVKRRR............................................................................. 167
6 -8.390IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  9  28.VSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEENED........................................................................................... 179
7 -8.090IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]  ali follow..  7  7..RKKKKLNTTEKNETDNSEQKPNNQEDDNKEQTRSTKHNKSNNSEQKKEEHKESSQDKQQNQSNQNQQQSAKQDESSQGQQNHSKQDDSDQGQQQHSKQGNSDQGQQQHSKQGDSNQGQQNHSKQNDSDQGQQQHSKQDESSQEQQNHSKQDDSDQGQQQHSKQDESSQEQQNHSKQDDSDQGQQQHSKQDESSQEQQNHSKQDDSDQDDSFQDTQQSSKQDDLAQDKQQHSKQDNSDQDKQQ 248
8 -6.720IDP06021 hypothetical protein TGME49_078860 [Toxoplasma gondii ME49] XP_002370589 [Toxoplasma gondii ME49]  ali follow..  12  209.KKKKKKNGESDSADAVEGAPLETGREKEKKKAEHRFEAEAIESEGGKKKKKDCPPASAPGSEADDGQQTEDAQERLGKSVSEEERKKNKGEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKEKSEKKKDGANSELSAGSEGEDARKKKKKKEASRGTSLSGSDDGRKKKSGEKS................................................. 402
9 -6.630IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  6  22............................................................................................................NNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEAFSFSPS.................................................. 107
10 -6.580IDP92613 RecName: Full=Serine-rich adhesin for platelets; AltName: Full=Staphylococcus aureus surface protein A; Flags: Precursor SAOUHSC_02990 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  9  1......................................................................................................................................................................................................................................MSKR---QKAFHDS 11
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.