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Query: [DL] KOG3999 Checkpoint 9-1-1 complex, HUS1 component, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFKTRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQVWSVLEVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYITDPEDEHTAVLTYYISTYVDLast
1 -5.000IDP06076 gene: dnaN; DNA polymerase III subunit beta [Helicobacter pylori J99] NP_223170 [Helicobacter pylori J99]  ali follow..  10  67....VGTINGKKFLDIISCLKD--SNIVLETKDDSLVIKQNKSSFKLP-----------DEFPEFPVIDPKVSLEINAPFLVDAFKKIANQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEKLFYENFSFKSDGMLAVVENETHAFFTKLIDGKEEFKEGIKLCSSLSSTIKLTLEKNNALFESL-------DSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFVLKCNEPSSPFLIQEPLDEKQSHLNAKISTLMMPI.. 372
2 -4.550IDP05169 NLP/P60 family protein [Bacillus anthracis str. Ames] BA_1952 [Bacillus anthracis str. Ames]  ali follow..  63...................................................................TADVLNVRSGAGTGHSVISKVKQGQVLQV-IGQENGWFKVTVNGQTGYVSGDFVTTGGKTGTTVQQGTGTYTVNVSSLN------VRTGPSTSHTVLGSVNK-GKTVQVVSEVQDWFKINFNGGTGYVSKDFVTKGGSAVSNQTQQPTTNNNTTTVQTGGSYVVNTGA---LKVRTGPATYNAVIGGVTNGTVLNV........................ 247
3 -4.510IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  12  123...EVSEAELQTITNLLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGNFSLVKTLPELHTLEVLGNAITELIENQPNLVTLSADELELKKLTLKNLSQLNGLGRIASSISIDWGDLESVTLMNLPEIISVDISGNYLDSDDIHLENLPAVLTRLPKINDTINVRSNKIDRLESSKLVDVPKLAT.......................................................................................... 340
4 -4.460IDP90134 Toll/IL1-receptor [TIR]-like protein [Monkeypox virus] MPXV_ZAI1979_005_166 [Monkeypox virus]  ali follow..  12  1MAFDISVNASKTINALV-------------FSTQQNKLVIRNEVNDIHYTVEFDRDKVVDTFISYNRHNDSIEIR.................................................................................................................................................................................................................... 63
5 -4.280IDP90671 gene: pdxJ; pyridoxal phosphate biosynthetic protein PdxJ [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1238 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  1MLLGVNIDHIAVLRQARMV------------DPDLLEAAFIVARHGDQITLHVREDR-------RHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGGLCLNHA--------------------------------KLKQSIEKLQNANIEVSLFINPSEDIEKSKILKAQFIELHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGL.......................... 212
6 -4.240IDP06435 gene: E1R; E1R [Monkeypox virus Zaire-96-I-16] NP_536525 [Monkeypox virus Zaire-96-I-16]  ali follow..  11  1..MDANIVSSSTIATYIDALAKNASELEQRSTAYEINVVNISTIQESFIRFTVTNKEGIK-IRTKIPLSKVHGLDVKNVQLVDAIDNIVWEKKSLVTENRLHKECLLRLSTEERHIFLDYKKYGSSIRLELVNLIQAKNFTIDFKLKYFLGSGAQSKSSLLHAINHPKSPNTSLEIEFTPRDNETVPYDELIKELTTLSRHIFMASPENVILSPPINAPIKTFMLPKQDIVGLDLENLYAVTKTD--GIPITIRVTSKGLYCY........................ 278
7 -4.230IDP00115 gene: VPA0551; hypothetical protein VPA0551 (gi 28900406) NT01VPA0514 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  10  1MALKPTIYKFRI------ALSDMNND---YYDSKNLTIALHPSEKPQRMLARILAFCLNAQWHVADDQSITHWIEIGEPEPDRIKKASRLAKQVKVYTYNTKAPVWWEKMSGKFSML--------PVSVESFDYDA--------------------IDMICQHLDRGTNLSVMI-----TGTSIFVDVNDQHVEVTVK......................................................................................... 173
8 -3.880IDP91357 50S ribosomal protein L25 [Vibrio vulnificus CMCP6] VV1_2850 [Vibrio vulnificus CMCP6]  ali follow..  28..............................................................VVYGGEAAPVAVALNHDDIVNQMDKPEFYEAITLVIGGEEVKVKPQ................................................................................................................................................................................... 73
9 -3.830IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]  ali follow..  11  144..........HMIRQTVFAVSTILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIV-------DEFQANVVIPGKSLNELSKILD--ESEEMVDIVITEYQ------VLFRTKHLLFFSRLLEGNYP-------------TRLIPAESKTDIFVNTKEFLQAIDRASLLARDVKLSTLEQAMLEISSNS-------------------PEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLI-------RTVNDESIIQLILPV.. 376
10 -3.820IDP95401 set236a-066 [Undefined organism]  ali follow..  225FKTKFSTNKKKGYAKEKAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKRDIASFLRQMHGLDYTDISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYI------ESFMERLNATTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIID........................................................................................................ 401

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.