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Query: [C] KOG4631 NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGGHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLILPGWKAGVAFTAALIFVEEAYQYKTHGTTSWDGHHLast
1 -8.350IDP91380 hypothetical protein VV1_1472 [Vibrio vulnificus CMCP6] VV1_1472 [Vibrio vulnificus CMCP6]  ali follow..  9  24.........................IVNILLSVITLGIYSAWAKVRTKRYNTFIAGDNFEYHAQPMQLLKGRLVALALVVIWVVANSFF.............. 90
2 -6.940IDP91497 hypothetical protein VP1683 [Vibrio parahaemolyticus RIMD 2210633] VP1683 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  14  258.SGTH----------LYVLVGRQEDIKDPSTWNKDVKIVDPWAASGATMFGDAQRPPVSNMFPPTEVIFDSHKLG............................ 325
3 -6.490IDP91905 hypothetical protein SpneCM_05473 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005473 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  3......................................KEPW-QEDIYDQEESRAERRHRNHGGADRMANRILTILASIFFVIVVVMVIVLIYLSSGGSNR.. 64
4 -6.420IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  15  391..EGYGQSITASELRIYRNKDNNQIMKNIKFYLHGKEIPAERILDPEWKYRPKYSGSTYKYS......................................... 453
5 -5.810IDP90544 gene: folA; dihydrofolate reductase [Yersinia pestis CO92] YPO0486 [Yersinia pestis CO92]  ali follow..  16  15IGMENAMPWHLPDLAWFKRNTLNKPVIMGRKTFESIGRPLPGRLNIVISSQPGTDERVTWAASIEEAL................................... 83
6 -5.670IDP95307 hypothetical protein VCA0020 [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232421 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  897.........................VYLIGVILTNVFKRSEWLSKSTWGKESAHWPVGKELTELEHLLHR................................. 944
7 -5.520IDP95369 set238a-013 [Vibrio cholerae]  ali follow..  8  897.........................VYLIGVILTNVFKRSEWLSKSTWGKESAHWPVGKELTELEHLLHR................................. 944
8 -5.160IDP95378 set238a-015 [Vibrio cholerae]  ali follow..  8  898.........................VYLIGVILTNVFKRSEWLLKSTWGKESAHWPVGQELTELERLLHR................................. 945
9 -5.130IDP95379 set238a-016 [Vibrio cholerae]  ali follow..  8  897.........................VYLIGVILTNVFKRSDWLSKSTWGKESAHWAVGQELTELERLLHR................................. 944
10 -5.110IDP91381 Beta-galactosidase/beta-glucuronidase [Vibrio vulnificus CMCP6] VV1_1469 [Vibrio vulnificus CMCP6]  ali follow..  10  1MQLSLTGYWQLSPLTDLSIPQDDLCFPAPLSEILPASLSEQAIAAQEWHLMHDIEVDDSLLAYPAVEMLAGVDYHAEVRL....................... 81
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.