current user: public
If you have questions about the server, please let us know.

Query: [S] KOG4852 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MTAPLIRVSRKRTADPHDALILHTKRAKHGGNPLVFTLYKAAGNDLELNGARVLDLPTQEHGMELADEENPLGFVKDEAVGLVGEVEKNVKKPAEQVSLNGRLLQPVTDGGGAAAGSSDDVVYDYYAIHEKRGNPEVVGNLEQDIEGADFRFAKRDELDLGDEDDSDGPPADDEDDSNDEDNWRNDYPDEESYDEDSDNGDPYGISEPDHWHAGEEAYSDESFHRRLQNMDLNDERYEAFYEGDETDEDADLast
1 -10.700IDP04017 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1035 [Clostridium perfringens ATCC 13124]  ali follow..  6  24................................................................................................................................................................NNQKEVSDNENSSNISNEEKNNKEVKNDNNDKKESKDSENDTKDNKDKNEQRDKEDLNKENMKEERDPKLDESVIVNNGIIIIPKNLKMAK 114
2 -9.170IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  11  1....................MLLSAIGGIGPTESRLQHIPFSTTRYLPIRSHVLQSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSP---------DRSSGEGSSDSDSLLSVVHRTKGNATQANKNQ-PKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQRQSLGDSSALDLFGSDTG 227
3 -9.140IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  11  1.......MKRK-------ALLIS-----------LIMILSMVVSTIYPTVSYASELGENSQIQSGSTNSST------------GEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTD----------------------------------------NKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEEN 177
4 -8.950IDP90212 gene: m063R; m063R, m63R MYXV_gp067 [Myxoma virus (strain Lausanne)]  ali follow..  33  175.........................................................................................................................................................DKGEMYAGVGDDPSIVDSSDSDDSSEEDTEEEDTEEEED........................................................... 215
5 -8.180IDP92613 RecName: Full=Serine-rich adhesin for platelets; AltName: Full=Staphylococcus aureus surface protein A; Flags: Precursor SAOUHSC_02990 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  8  1MS------KRQKANEKTRVRLYKSGKNWVKSGIKEIEMFKIMGLPFISHSLVSQDNQSISKKMTGYGLKTTAVIGGAFTVNMLHDQQAFAASDAPLTSELNTQSETVGNQNSTTIEAST--------ADSTSVTKNSSSVQTSNS----------------SSEKSEKVTSTTNSTSNQQE...................................................................... 162
6 -8.070IDP05727 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_4605 [Bacillus anthracis str. Ames]  ali follow..  4  40...................................................................................................................................................................VPDTKEQASSSDKKVSQQTTKENKSEKAKGKEETKKNEQEKTEAKKKEEEKLKAEEEQKKAEEEAKANEKVPAEKTQPKATDAYTKSS 127
7 -7.350IDP05543 hypothetical protein CD2628 [Clostridium difficile 630] CD2628 [Peptoclostridium difficile 630]  ali follow..  12  509........................................................................................................................................................TDSNENKNPHDIPKDGNKENNSDKEKGFYNKNSITENDDNYDLSSKSVFGTNEHSFPYRESISNKNQDTNKNKSNISDYDGIINNNYKLESKEYNLKKD 607
8 -7.170IDP04254 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1823 [Clostridium perfringens ATCC 13124]  ali follow..  6  79.................................................................................................................................................................KYSKPSSSSSEKKKSQGNSNYSTTDKFNKPSSGSNSSSDKVESGKDSSNSDKGSKQGNNNYSTTDKFNSKAPNNQEGSSKENNKYENNDK 168
9 -7.150IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  7  25................................................................................................................................................................DTGTVTKEEATQLQQDKAKKEAAIKEQQKIEEEKKRIAQEQLKNDMAKKEEAIKAQQKSEEGKKEAAQVQPKNAATKKEVAKPAVQGEK.. 113
10 -7.020IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  7  22...........................................................................................................................................................................NNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEA 101
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;