FFAS03 results for COG0009

Query: [J] COG0009 Putative translation factor (SUA5), from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 .
#	Score	Template	Links and tools	%id	First	`MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIR`	Last
1	-74.900	`sp\|Q86U90\|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1`	`ali follow..`	26	49	`RLPGSGAVQAASPERAGTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC--RVRVPEGLLKDLLPGPVTLVMERSEE-LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEF-QDLWPQLSLVIDGGQIGDGLGSTVVDLSPGKFGIIRPGCALESTTAIL----------------QQKYGLLPSHASY........................................................................................................`	278
2	-5.940	`sp\|O00339\|MATN2_HUMAN(removed signalp:1-23) Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=3`	`ali`	14	1	`...................DVSEWASKAKANGI------TMYAVGVGKAIEEELQEI---ASEPTNK--LFYAEDFSTMDEISEKLKKGI................................................................................................................................................................................................................................................................`	61
3	-5.710	`sp\|Q99707\|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2`	`ali`	10	24	`..................EAYQEQAKGLLDGGVDILLIETIFDTANAKAALFALQNLFEEKYAPR--PIFISGTIVDKSGR---------------------TLSGQTGEGFVISVSHGEPLCIGLNCALGAFIEIIGKCTTAYVLCPNTFGDYDETPSMMAKHLKDFAMDGLVNIVGGCC--GSTPDHIREIAEAVKNCKPRVPPATAFEGHMLLSGLEPFRIGPYTNFVNIGER..............................................................................................................`	227
4	-5.580	`sp\|Q93075\|TATD2_HUMAN Putative deoxyribonuclease TATDN2 OS=Homo sapiens GN=TATDN2 PE=1 SV=2`	`ali`	16	113	`.......CHPHFARYYSESQERNLLQALRHPKAVAF--EM--GL-KCTTPVPEQHKVFERQAVSLKKPLVIHCREAEDLLEIMKKFVPPDYKIHRHCFTGSYPVIEP--TAVLTYSSAWEAREALRQIPLE----RIIVETDAPYFLPRKSLCQYAHPGLALHTVREIARVKDQPLS.........................................................................................................................................................................`	295
5	-5.460	`sp\|P00519\|ABL1_HUMAN Tyrosine-protein kinase ABL1 OS=Homo sapiens GN=ABL1 PE=1 SV=4`	`ali`	26	1	`..........................LLEKDYRMERPPEKVYEL---------MRACWQWN--PSDRPSFAEI--HQAFETMFQE.....................................................................................................................................................................................................................................................................`	49
6	-5.420	`sp\|O75356\|ENTP5_HUMAN(removed signalp:1-20) Ectonucleoside triphosphate diphosphohydrolase 5 OS=Homo sapiens GN=ENTPD5 PE=1 SV=1`	`ali follow..`	15	24	`....................................SASTLYGIMFDAGSTGTRIHVYTFVQKMPGQLPILEGEVFDSVKPGLSAFVDQPKQGAET-----VQGLLEVAKDSIPRSHWKKTPTAGLRLLPEHKAKALLFEVKE-VSIMDGSDEGILAWVTVNFLTGQLHGHRQETV--GTLDLGGASTQITFL.........................................................................................................................................................`	190
7	-5.400	`sp\|P51170\|SCNNG_HUMAN Amiloride-sensitive sodium channel subunit gamma OS=Homo sapiens GN=SCNN1G PE=1 SV=4`	`ali`	6	1	`MAPGEKIKAKIKKNLPVTGPQAPTIKEL----MRWYCLNTTHGCRRIVVSRGRLRRLL----------IGFTLTAVALI---------QCALLVFSFYTVSVSIKVHFRKLDFPAVTICNINPY..............................................................................................................................................................................................................................`	105
8	-5.380	`sp\|Q15303\|ERBB4_HUMAN(removed signalp:1-25) Receptor tyrosine-protein kinase erbB-4 OS=Homo sapiens GN=ERBB4 PE=1 SV=1`	`ali`	23	1	`....................TREIPDLLEKGERLPQPTIDVYMVMVKCWMIDA-------DSRPKFKELAAEFSRM..............................................................................................................................................................................................................................................................................`	52
9	-5.340	`sp\|Q15878\|CAC1E_HUMAN Voltage-dependent R-type calcium channel subunit alpha-1E OS=Homo sapiens GN=CACNA1E PE=1 SV=3`	`ali`	19	2	`................................TVHF-TSTLMAL---------IRTALDIKIAKGGADR--------------QQLDSELQKETLAIWP--LDLLVPMPKA---SDLTVGKIYAAMMIMDY.......................................................................................................................................................................................................................`	77
10	-5.330	`sp\|Q8N3X6\|LCORL_HUMAN Ligand-dependent nuclear receptor corepressor-like protein OS=Homo sapiens GN=LCORL PE=2 SV=4`	`ali`	11	76	`................DHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYK-VKERSGTLKTPPKKKLRLPDTGLYNMTDSGTGSCKNSSK--------PV....................................................................................................................................................................................................................................................`	152

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster