current user: public

If you have questions about the server, please let us know.

Query: [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340
# Score Template Links and tools%idFirst MREQLEALRDDAIKKIEQAQEKKVVQEIRVKYLGKKGPVTEVLRGMGKLSPEERPVIGQLANDVREAIGKAIESKMEALEQAEIHRKLQEETIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFKRVLast
1 -104.000sp|Q9Y285|SYFA_HUMAN Phenylalanyl-tRNA synthetase alpha chain OS=Homo sapiens GN=FARSA PE=1 SV=3  ali follow..  22  119.AADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQL--RFKPAYNPYTEPSMEVFSYH----------QGLKKWVEVGNSGVFRPEMLLPMGLP-ENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDS. 490
2 -62.100sp|O95363|SYFM_HUMAN Phenylalanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1  ali follow..  26  2.................VGSALRRGAHAYVYLVSKASHIS---RGHQHQAWGSRPPAAECATQRAPGSVVELLGKS-----YPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLL----HAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGA--QDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFC.. 344
3 -46.800sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3  ali   17  3.............................................................................................................................LTGGTSQDVEDFLVSFSELSLPGRDGKEEACEGTCGQAKICLRPSLLVHVQDVIEVPDFLSGSLHILSGPVFQKCHILPFTMPAFHETLFILGVNQSLLDHLKGILDSLLTQTL---PESSKLSSLVKFVLQSNGKDYMIRVKTHN------SPDCTEDLIIGSVITSATSVIHKD---QCFVFVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFV.. 219
4 -15.200sp|P14868|SYDC_HUMAN Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2  ali follow..  12  80LRQQQFNVQALVAVGDHASKQMVKFAA-KESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLRTS-SGICHLFRETLINKGFVEIQTPKIISA----------ASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFE----KVFSIGPVFRAEDSNTRHLTEFVGLD-IEMAFNYHYHEVMEEIADTMVQIFGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSNSYDMFEILSGAQLLTERALHHGIDLEKIKAYGGGIGLERVTMLFLGLHNVRQT.............. 489
5 -13.800sp|O43776|SYNC_HUMAN Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1  ali follow..  16  150.........RDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSK--LKARSMVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEA----FLTQSSQLYLETCLPALG-----------DVFCIAQSYRAEQSRTRHLAEYTHVEAECP---LTFDDLLNRLEDLVCDVVAGSIVHELNPNFQPPKRPPVEIKSFYMQRCPEDSRLTESVDVLEIVGGSM---AGYKREGIDPTPYYWYGYGLGLERFLTWILNRYHIRDV.............. 536
6 -13.100sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chain OS=Homo sapiens GN=FARSB PE=1 SV=3  ali follow..  11  283...TVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIVEDAAIAYGYNNIQMTLP-KTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPKGGYVIKASEGPAFFPGRCAEIFAR----------------SVGKLGVLHPDVITKFELT---MPCSSLEINVGPFL.......................... 589
7 -12.500sp|Q96I59|SYNM_HUMAN(removed signalp:1-16) Probable asparaginyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=NARS2 PE=1 SV=3  ali follow..  13  30IQGWIRSVRSQKEVLFLHVNDGSSLESLQVVADSRELNFGSSVEVQGQLIKSPSKRQNVELKAEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGLFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGAFT-----QVFTFGPTFRAENSQSRHLAEFYMIEAEISFVD-SLQDLMQVIEELFKATTMM-VKHCGNIPVFVINYPLTLKPFYMRDNEDGPQHTVAAVDLLELFGGGLREERYLARSGLTEVYQWYLGFGMGFERYLQCILGVDNIKDV.............. 449
8 -10.400sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3  ali follow..  14  146...DLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHML-----PHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE--------LDMNLYMRIAPELYHKMLVV--------RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD--YHDLMEITEKMVSGMVKHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLVGEFLEVTCINPTFIEAMFIDENFCTALGWGMGIDRVAMFLTDSNNIKEV.............. 567
9 -9.570sp|P12081|SYHC_HUMAN Histidyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2  ali follow..  13  1................................MAERAALEELVKLQGERVRGLKQQKAS-----AELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK----ETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDAMTRGRYREFYQCDFDIAGNFDPMAECLKIMCEILSSLQIGDFLVKVNDDY--YTGVIYEAVLLQTPAQAGE----EPLGVGSVAAGGRYD-GLVGMFDPKGRKVPCVGLSIGVERIFSIV....................... 393
10 -9.240sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3  ali   27  8.....................................................................................................................................................................................................................................................................................SPDCTEDLIIGSVITSATSVIH---KDQCFVFVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFV.. 69

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.