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Query: [J] COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDSNSRLVYSTQTGRIEEPKTAPVRPKGDGIVRIQRQTSGRKGKGVCLITGIEMNDAELTKLAAELKKKCGCGGAVKEGIIEIQGDKRDLIKSLLEAKGMKVKLAGGLast
1 -37.700sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1  ali follow..  25  2...SAIQNLHSFDP-FADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD-YDKKKLVKAFKKKFACNGTVIEHVIQLQGDQRKNICQFLVEIGLAKD.... 105
2 -36.100sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2  ali follow..  25  2...STIQNLQSFDP-FADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD-YDKKKLVKAFKKKFACNGTVIEHVIQLQGDQRKNICQFLLEVGIVKE.... 105
3 -35.500sp|O43583|DENR_HUMAN Density-regulated protein OS=Homo sapiens GN=DENR PE=1 SV=2  ali follow..  23  100..................GRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVGEDEIIIQGDFTDDIIDVIQEKWPEVD.... 186
4 -24.800sp|P41214|LIGA_HUMAN Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3  ali follow..  20  477...................PGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNP-QVQIQGNQVHHLGWLLLEEQLPRKHI.. 571
5 -17.600sp|Q13405|RM49_HUMAN 39S ribosomal protein L49, mitochondrial OS=Homo sapiens GN=MRPL49 PE=1 SV=1  ali follow..  13  86.........................VRRSRMHNIPVYKDITHGNRQMTVIRKVEG---DIWALQKDVEDFLSPLLGKTTGTLRIKGYFDQELKAWLLEKGF....... 166
6 -6.790sp|Q8NAP1|GATS_HUMAN Putative protein GATS OS=Homo sapiens GN=GATS PE=5 SV=1  ali follow..  104........................................................PIGMTKIAKSVIAPLADQNTYQTDFILVLKRDLPFVTHTLSSEFTILWSVA. 161
7 -6.610sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2  ali follow..  10  21..................................LIAKVEGKGNGIKTVIVNMVDVAKALNRPTKYFGCELGAQTQFKNDRYIVNGSHANKLQDMLDG.......... 91
8 -6.490sp|P11086|PNMT_HUMAN Phenylethanolamine N-methyltransferase OS=Homo sapiens GN=PNMT PE=1 SV=1  ali follow..  15  180.............................................SAFCLEAVSPDLASFQRALDHITTLLRPGGHLLEESWYLAGEAEEEVREALVRSGYKVR.... 251
9 -6.450sp|Q9ULL8|SHRM4_HUMAN Protein Shroom4 OS=Homo sapiens GN=SHROOM4 PE=1 SV=3  ali   10  103..........GEEGDSEPKECSRMGGRRSGGTRGRSIQNRRKSERFATNLRN------EIQRRKAQLQKSKGPLSQLCDTK........................... 167
10 -6.350sp|Q49AJ0|F135B_HUMAN Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2  ali   12  83.....................................ENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPKNQMDTFADFDTMTDRLDEIIQHIQLYNLSISRIGN 171

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.